Locus 7013

Sequence ID 2L_DroMel_CAF1
Location 19,556,540 – 19,556,660
Length 120
Max. P 0.579462
window11186

overview

Window 6

Location 19,556,540 – 19,556,660
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.75
Mean single sequence MFE -30.12
Consensus MFE -24.36
Energy contribution -24.48
Covariance contribution 0.12
Combinations/Pair 1.35
Mean z-score -1.48
Structure conservation index 0.81
SVM decision value 0.09
SVM RNA-class probability 0.579462
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19556540 120 - 22407834
AAGUAGACAUCCUCCAAUUGCUCUUCCAAAUAGGACAGAUCGAUAUCAUGAUUCCUGGGAAGUUCCGUUGGGGGCUUGUUAAAUAGCAAAGCAUUUGACAGUUUAUUGGUGUAAAACUGA
.(((((((..((((((((.(..(((((...(((((...((((......))))))))))))))..).))))))))..((((((((.((...)))))))))))))))))(((.....))).. ( -34.30)
>DroSec_CAF1 9034 120 - 1
AAAUGGACAUCCUCCAAUUGGUCUUCCAAAUAGGACAGGUCUAUAUCAUGAUUCCUGGGAAGCUCCGUUGGGGGCUUGUCAAAAGACAAAGCAGUUGACAGUUUAUUUGUAUAAAAAUGA
((((((((..((((((((.((.(((((...(((((...(((........)))))))))))))..))))))))))..((((((..(......)..))))))))))))))............ ( -35.20)
>DroSim_CAF1 10032 120 - 1
AAGUGAACAUCCUCCAGUUGGUCUUCCAAAUAGGACAGGUCUAUGUCAUGAUUCCUGGGAAGUUCCGUUGGGAGCUUGUCAAAAGACAAAGCAUUUGACAGUUUAUUGGUAUAAAAAUGA
.(((((((...((((...(((.(((((...(((((...(((........)))))))))))))..)))...))))..(((((((.(......).))))))))))))))............. ( -32.00)
>DroEre_CAF1 9699 120 - 1
AAAUAGAAGUCCUUCAACUGAUCUUCUAAGGAGCUCAUUUCUAUUUCAUGAUUUCUGGGAAAGCUCGUUGAGGGCUUGACAAAUGACAAAGCAUUUGAGAGUUUAUUGACAUAAAACAGA
......(((((((.((((.((.(((((.(((((.((((.........))))))))).)).))).)))))))))))))..((((((......))))))...(((....))).......... ( -26.30)
>DroYak_CAF1 9394 120 - 1
AAAUGAACGUCGUUCAAUUGCUCUUCUAAGUACGACAAGUUUAUUUCAUGAUUUCUGGGAAGUUCCGUUGAGGGCUUGUUAAAUGACAUAAUAUUUGACAGUUUAUUGGCAUAAAACUGA
.((((((((((.((((((.(..(((((.((......(((((........))))))).)))))..).))))))))).(((((((((......))))))))))))))))............. ( -22.80)
>consensus
AAAUGGACAUCCUCCAAUUGCUCUUCCAAAUAGGACAGGUCUAUAUCAUGAUUCCUGGGAAGUUCCGUUGGGGGCUUGUCAAAUGACAAAGCAUUUGACAGUUUAUUGGUAUAAAACUGA
.(((((((..((((((((.(..(((((....((((...(((........))))))).)))))..).))))))))..(((((((((......))))))))))))))))............. (-24.36 = -24.48 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:15 2006