| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,549,133 – 19,549,229 |
| Length | 96 |
| Max. P | 0.650472 |
| Location | 19,549,133 – 19,549,229 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 72.11 |
| Mean single sequence MFE | -18.69 |
| Consensus MFE | -6.17 |
| Energy contribution | -7.17 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19549133 96 - 22407834 UACUCACUUCCAGACGUCCUUGGGCCUCUGAACUUCUGCCCUGAACCACUCCUU------UUCCUCUUCAGAGCUAGGA---UUUUCAAUCUGUUUUGGUUCCCU ..........((((.(((....))).))))............((((((.((((.------...(((....)))..))))---....(.....)...))))))... ( -18.00) >DroVir_CAF1 1444 99 - 1 UACGAACCUCCAUUUGUCCUUGGGUCGCUGAACCUCAGCCUUGAACCAUUCCUUUUCCUUCUCUUCUUCG---GUCGGU---GGAUCAAUUUUCUUUGGCUCCCU ..(((.((((((........))))..((((.....))))..............................)---))))..---(((((((......)))).))).. ( -17.30) >DroEre_CAF1 1520 96 - 1 UACUUACUUCCAGACAUCCUUGGGCCUUUGAACUUCGGCCCUAAACCACUCCUU------UUCCUCUUCGGUGCUGGGA---UGUUCAAUCUUUUUUGGUUCCCU .........(((((((((((.(((((..........)))))...(((.......------.........)))...))))---))))..........)))...... ( -19.79) >DroWil_CAF1 1539 102 - 1 AACUUACGACCAAACAUCUUUGGGCCUCUCCACAUCGACCUUGAACCAUUCCUUUUCCUUCUCAUCCUCAUUUUCGGGA---UUCUCGAUUUUCUUGGGCUCCCU .........(((((....)))))((((......(((((....(((.............)))..(((((.......))))---)..)))))......))))..... ( -14.22) >DroYak_CAF1 1531 96 - 1 AACUUACUUCCAGACAUCCUUGGGCCUCUGAACUUCGGCCCUGAACCACUCCUU------UUCCUCUUCAGUGGUGGGA---UUAUCAAUCUUUUUUGGUUCCCU .....................(((((..........)))))...((((((....------.........))))))((((---..(((((......))))))))). ( -23.12) >DroMoj_CAF1 1453 102 - 1 AUCGAACCUCCAUUUGUCCUUAGGUCUCUGCACAUCGACCUUAAACCAUUCCUUCUCCUUUUCUUCUUCA---UGAGGUAGAGGUUCAAUUUUCUUUGGUUCCCU ...(((((......((.....(((((..........))))).....))........(((((.((((....---.)))).))))).............)))))... ( -19.70) >consensus AACUUACUUCCAGACAUCCUUGGGCCUCUGAACUUCGGCCCUGAACCACUCCUU______UUCCUCUUCAGUGCUGGGA___UGUUCAAUCUUCUUUGGUUCCCU .....................(((((..........))))).((((((.((((......................)))).................))))))... ( -6.17 = -7.17 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:13 2006