| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,539,610 – 19,539,717 |
| Length | 107 |
| Max. P | 0.660371 |
| Location | 19,539,610 – 19,539,717 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 82.90 |
| Mean single sequence MFE | -40.83 |
| Consensus MFE | -29.62 |
| Energy contribution | -31.72 |
| Covariance contribution | 2.10 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19539610 107 + 22407834 UGCGAGAGCAAUAUGCACGUUCAGGUGGCUCCACUGGCGCCCGUA---GAGGAGCCAAAGGCCACCAAGCAAGAGGGUUCUUCGGCCAACGCUGAAGCUCCUUCUGUCGA (((..((((.........)))).(((((((....((((..((...---..)).))))..)))))))..)))((((((..(((((((....)))))))..))))))..... ( -45.90) >DroSec_CAF1 9087 107 + 1 UGCGAGAGCAAUAUGCACGUUCAGGUGGCUCCACUGGCGCCCAUA---GAGGAGCCAAAGGCCACCAAGCAAGAGAGUUCUUCAGCCAACGCUGAAGCUCCUUCUGUCGA (((....))).......((....(((((((....((((.((....---..)).))))..)))))))..(((..((.(..(((((((....)))))))..)))..))))). ( -40.50) >DroSim_CAF1 9049 107 + 1 UGCGAGAGCAAUAUGCACGUUCAGGUGGCUCCACUGGCGCCCAUA---GAGGAGCCAAAGGCCACCAAGCAAGAGGGUUCUUCGGCCGACGCUGAAGCUCCUUCUGUCGA (((..((((.........)))).(((((((....((((.((....---..)).))))..)))))))..)))((((((..(((((((....)))))))..))))))..... ( -45.60) >DroEre_CAF1 10625 101 + 1 UG------CACUAUGCACAUUCAGGUGGCUCCACUGGUGCCCAUA---GAGGAGCCAAAGGCCACCAAGCAGGAGGGUUCUUCUGCCAACGCUGAAGGUCCCUCCGCCGA ((------(.....)))......(((((((....((((.((....---..)).))))..)))))))..((.((((((..((((.((....)).))))..))))))))... ( -42.90) >DroYak_CAF1 9492 107 + 1 UGCGAGAGCAAUAUGCACGUUCAGGUUGCUCCACUGGAGCCCAUA---GAGGAGCCAAAGGCCACCAAGCAAGAGGGUUCUUCGGCCAACGCUGAAGGUCCUUCCGCCGA (((....)))...(((.......((..(((((...)))))))...---..((.(((...)))..))..))).(((((..(((((((....)))))))..)))))...... ( -37.30) >DroAna_CAF1 9098 110 + 1 UGCGAGCAGAGUAUGCACGUCCAGGUAGCUCCCCUCACUCCCACGGUGGUGGAAACCGAUGCCAUCAAGAAGGAAGCUUCCGCCGCCGGCGCUUCAGUUCCCUCGGCCGA ...(((..((((.(((.(.....))))))))..))).......((((.(.((.(((.((.((......((((....)))).(((...))))).)).))).)).).)))). ( -32.80) >consensus UGCGAGAGCAAUAUGCACGUUCAGGUGGCUCCACUGGCGCCCAUA___GAGGAGCCAAAGGCCACCAAGCAAGAGGGUUCUUCGGCCAACGCUGAAGCUCCUUCUGCCGA (((....)))....((.......(((((((....((((.(((......).)).))))..))))))).....((((((..(((((((....)))))))..))))))))... (-29.62 = -31.72 + 2.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:13 2006