| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,021,000 – 2,021,092 |
| Length | 92 |
| Max. P | 0.550949 |
| Location | 2,021,000 – 2,021,092 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 81.94 |
| Mean single sequence MFE | -26.41 |
| Consensus MFE | -17.23 |
| Energy contribution | -18.12 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2021000 92 + 22407834 -----CUAGAAUCCC--UGCCACACGGAGUCCCAUCGGCAGCAG------------CUGCUGUCGCCAAGGGGCACUCAAAUUAAGCGACAUUUAAUGUCACACCUUCUUG -----..((((....--.((......(((((((..(((((((..------------..))))))).....))).)))).......))(((((...))))).....)))).. ( -26.82) >DroSec_CAF1 38457 92 + 1 -----CUAGAAUCCC--UGCCACUCGGAGUUCCAUCGGCAGCAG------------CUGCUGUCGCCAAGGGGCACUCAAAUUAAGCGACAUUUAAUGUCACACCUUCUUG -----..((((....--.((......(((((((..(((((((..------------..))))))).....))).)))).......))(((((...))))).....)))).. ( -23.92) >DroSim_CAF1 36918 92 + 1 -----CUAGAAUCCC--UGCCACUCGGAGUCCCAUCGGCAGCAG------------CUGCUGUCGCCAAGGGGCACUCAAAUUAAGCGACAUUUAAUGUCACACCUUCUUG -----..((((....--.((......(((((((..(((((((..------------..))))))).....))).)))).......))(((((...))))).....)))).. ( -26.82) >DroEre_CAF1 37042 97 + 1 AGCACCCAGCAUCCU--UGCCACUUGGAGUUCCAUCGGCAACAG------------CUGCUGCCGCCAAGGGGCACUCAAAUUAAGCGACAUUUAAUGUCACACCUUCUUG .((...(((((.(.(--((((...(((....)))..)))))..)------------.)))))..(((....)))...........))(((((...)))))........... ( -26.30) >DroYak_CAF1 40127 97 + 1 UGCUUCCUGCAUCCU--UGCCACUCGGCGCACCAUCGGCAACAG------------CUGCUGCCGCCGAGGGGCACUCAAAUUAAGCGACAUUUAAUGUCACACCUUCUUG .((((..........--((((.(((((((...((.((((....)------------))).)).))))))).))))........))))(((((...)))))........... ( -31.67) >DroAna_CAF1 36264 106 + 1 -----UCCCAUUCCCAUUUCCAUUCGCAUUCCCAUCUGCCACAGCUCUGGCACUGGCUCCUGUUGCCAAGGGGCACUCAAAUUAAGCGACAUUUAAUGUCACGCCUUCAGG -----.........((((.....((((.....((..(((((......))))).))((((((.......))))))...........)))).....))))............. ( -22.90) >consensus _____CCAGAAUCCC__UGCCACUCGGAGUCCCAUCGGCAACAG____________CUGCUGUCGCCAAGGGGCACUCAAAUUAAGCGACAUUUAAUGUCACACCUUCUUG .........................((.(((((..(((((.(((((........))))).)))))....)))))...........(.(((((...))))).).))...... (-17.23 = -18.12 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:17 2006