| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,520,938 – 19,521,038 |
| Length | 100 |
| Max. P | 0.781836 |
| Location | 19,520,938 – 19,521,038 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 74.84 |
| Mean single sequence MFE | -31.58 |
| Consensus MFE | -20.29 |
| Energy contribution | -20.27 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19520938 100 - 22407834 GAGAGCCAGCACCACGAAGGCUCCGUUCGGCAGAAUCUCACAAGUGCUCACUUGCGCCGGUGGCUUAAACACGGCCAGGGAUUUGGCUGC--AAG----ACC-AGAA--- (.(((((..(.....)..))))))(((((((.(((((((.(((((....))))).((((((.......)).))))..))))))).)))).--..)----)).-....--- ( -32.40) >DroPse_CAF1 27863 104 - 1 GAGGGCCAGAACGACAUAGGCUCCGUUGGGCAGUAUCUCGCAGGUGCUCACCUGCGCGGGUGGCUUGAAAACUGCCAGCGAUUUGGCUGC--CAC----AAAAAUGAGGA (.(((((...........)))))).(((((((((...((((((((....))))))((.((..(........)..)).))))....)))))--).)----))......... ( -38.50) >DroGri_CAF1 20779 106 - 1 GAGAGCGAGCACAGCAAACGCACCACUUGGCAGUAUCUCGCAGGUGCUGAUCUGUGCCGGUGGCUUGAAAACGGCCAGCGAUUUGGCUGAUUUGGCAAAAAC-AAAC--- .....((.((((((.....(((((.....((........)).)))))....))))))))((.(((..(((.(((((((....))))))).))))))....))-....--- ( -31.80) >DroWil_CAF1 37365 100 - 1 GAGAGCCAAAACGACAAAUGCUCCAUUUGGCAAUAUCUCACAGGUCGAAACUUGAGCUGGUGGCUUAAAGACAGCCAAUGAUUUGGCUGU--AAA----AAA-GGAA--- ..((((((......((((((...))))))...........(((.((((...)))).))).))))))....((((((((....))))))))--...----...-....--- ( -29.90) >DroYak_CAF1 14441 100 - 1 GAGAGCCAGCACAACGAAGGCUCCGUUUGGUAGAAUCUCACAUGUACUCACUUGAGCCGGUGGCUUAAACACAGCCAGAGAUUUGGCUGC--AAG----AAC-AGGA--- (.(((((..(.....)..))))))(((((((.(((((((.......(((....)))....(((((.......)))))))))))).)))..--..)----)))-....--- ( -27.30) >DroAna_CAF1 13776 99 - 1 AAGAGCCAGGACAACAAAAGCCCCGUUGGGCAGUAUCUCACAUGUGCUAACUUGAGCAGGUGGCUUAAAAACGGCAAGGGAUUUGGCUGU--A-G----AAA-AGAA--- .(.(((((((.........((((....))))....((((.(((.((((......)))).)))(((.......)))..))))))))))).)--.-.----...-....--- ( -29.60) >consensus GAGAGCCAGCACAACAAAGGCUCCGUUUGGCAGUAUCUCACAGGUGCUCACUUGAGCCGGUGGCUUAAAAACGGCCAGCGAUUUGGCUGC__AAG____AAA_AGAA___ ..((((((...........(((......))).........(((((....)))))......)))))).....(((((((....)))))))..................... (-20.29 = -20.27 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:11 2006