Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,506,176 – 19,506,276 |
Length | 100 |
Max. P | 0.975440 |
Location | 19,506,176 – 19,506,276 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 75.82 |
Mean single sequence MFE | -21.69 |
Consensus MFE | -14.31 |
Energy contribution | -14.75 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -2.12 |
Structure conservation index | 0.66 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19506176 100 + 22407834 AAAAUAAAAGGUGUAGAUAAGAGAAGGGCUAUUCCAAGAGAUUCCCAGAACCAGACCCUGCUGAUCAUUGCCUUUUAUAGUAUAAAUAACCCU----------------UAAAGAA ...((((((((((..(((.((...((((((.(((...(.....)...)))..)).)))).)).)))..))))))))))...............----------------....... ( -19.00) >DroSec_CAF1 1501 89 + 1 AAAAUAAAAGGUUUACAUAAGAGCAGGG-----------GAUUCCUAGAACCAGACCCUGCUGAUCAUUGCCUUUUAUAGUAUAAAUAACCCU----------------UAAAGAA ...(((((((((.........(((((((-----------................))))))).......)))))))))...............----------------....... ( -20.48) >DroSim_CAF1 1007 89 + 1 AAAAUAAAAGGUUUACAUAAGAGCAGGG-----------GAUUCCUAGAACCAGACCCUGCUGAUCAUUGCCUUUUAUAGUAUAAAUAACCCU----------------UAAAGAA ...(((((((((.........(((((((-----------................))))))).......)))))))))...............----------------....... ( -20.48) >DroEre_CAF1 1199 110 + 1 UAAAUAAAAGGUUUACAUAUGUGUAGGGCUGUUUCAAGGAAUUCCUGGAACCAGACCCUGGUGAUCAUUACCUUUUAUAGUGUAAGU------GACGUGUCGUUUAAGUUAAAGAA ...(((((((((.(((....)))((((((((.(((.(((....))).))).))).))))).........)))))))))....(((((------((....))))))).......... ( -26.80) >consensus AAAAUAAAAGGUUUACAUAAGAGCAGGG___________GAUUCCUAGAACCAGACCCUGCUGAUCAUUGCCUUUUAUAGUAUAAAUAACCCU________________UAAAGAA ...(((((((((.........(((((((...........................))))))).......)))))))))...................................... (-14.31 = -14.75 + 0.44)
Location | 19,506,176 – 19,506,276 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 75.82 |
Mean single sequence MFE | -22.35 |
Consensus MFE | -12.69 |
Energy contribution | -13.56 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.09 |
Mean z-score | -2.30 |
Structure conservation index | 0.57 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19506176 100 - 22407834 UUCUUUA----------------AGGGUUAUUUAUACUAUAAAAGGCAAUGAUCAGCAGGGUCUGGUUCUGGGAAUCUCUUGGAAUAGCCCUUCUCUUAUCUACACCUUUUAUUUU .......----------------...............((((((((....(((.((.(((((...((((..((.....))..)))).)))))...)).)))....))))))))... ( -24.20) >DroSec_CAF1 1501 89 - 1 UUCUUUA----------------AGGGUUAUUUAUACUAUAAAAGGCAAUGAUCAGCAGGGUCUGGUUCUAGGAAUC-----------CCCUGCUCUUAUGUAAACCUUUUAUUUU .......----------------...............((((((((..((((..(((((((...(((((...)))))-----------))))))).)))).....))))))))... ( -20.60) >DroSim_CAF1 1007 89 - 1 UUCUUUA----------------AGGGUUAUUUAUACUAUAAAAGGCAAUGAUCAGCAGGGUCUGGUUCUAGGAAUC-----------CCCUGCUCUUAUGUAAACCUUUUAUUUU .......----------------...............((((((((..((((..(((((((...(((((...)))))-----------))))))).)))).....))))))))... ( -20.60) >DroEre_CAF1 1199 110 - 1 UUCUUUAACUUAAACGACACGUC------ACUUACACUAUAAAAGGUAAUGAUCACCAGGGUCUGGUUCCAGGAAUUCCUUGAAACAGCCCUACACAUAUGUAAACCUUUUAUUUA ...............((....))------.........(((((((((...........(((.(((.(((.(((....))).))).))))))((((....)))).)))))))))... ( -24.00) >consensus UUCUUUA________________AGGGUUAUUUAUACUAUAAAAGGCAAUGAUCAGCAGGGUCUGGUUCUAGGAAUC___________CCCUGCUCUUAUGUAAACCUUUUAUUUU ......................................((((((((..((((..(((((((((((....))))...............))))))).)))).....))))))))... (-12.69 = -13.56 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:04 2006