Locus 7006

Sequence ID 2L_DroMel_CAF1
Location 19,504,688 – 19,504,801
Length 113
Max. P 0.600349
window11172

overview

Window 2

Location 19,504,688 – 19,504,801
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 78.84
Mean single sequence MFE -38.18
Consensus MFE -23.26
Energy contribution -25.58
Covariance contribution 2.31
Combinations/Pair 1.19
Mean z-score -1.79
Structure conservation index 0.61
SVM decision value 0.13
SVM RNA-class probability 0.600349
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19504688 113 - 22407834
AUCGGAAUCGGAAUGGUUGGGCGCUUCUUUUCAGCACUGGUUAUGUUAGCGACAGCGCUGUUAAA-------UGUAAAGUGUGCCGCCGUCAUGGUCACACUGCCCGACUGCUGGCGAUA
((((...((((...((((((((((...((..((((.(((.............))).))))..)).-------.))..(((((((((......))).)))))))))))))).)))))))). ( -38.52)
>DroSim_CAF1 19856 120 - 1
AUCGGAAUCGGAAUGGUUGGGCGCUUCUUUUCAGCACUGGACAUGUUAGCGACAUCGCUGUUAAAUGUUAAAUGUUAAGUGUGCCGCCGCCAUGGUCACACUGCCCGACUGCUGGCGAUA
((((...((((...((((((((..........((((...(((((..(((((....)))))....)))))...)))).(((((((((......))).)))))))))))))).)))))))). ( -42.30)
>DroEre_CAF1 19054 103 - 1
AUCG---UCACG---AUUGGGCGCUUCU-UUCAGCAGCGGACAUGUUAACAACUUCGCUGUUAAG-------UGUUAGGCGUACCG---CCAUGGUCACACUGCCCGACUGCAGGCGAUA
((((---((.((---.((((((......-...(((((((((..((....))..)))))))))..(-------(((((((((...))---)).))).)))...)))))).))..)))))). ( -37.30)
>DroYak_CAF1 19094 102 - 1
AUCG---UCGCA---AUUG-GCGCUUCUUUUCAGCAGCGGACA-GUUAACGACUUCGCUGUUAAA-------CGUUAUGGGUACCG---CUAUGGUCACUCUGCCCAACUGCUGGCGAUA
((((---(((((---.(((-(.((........(((((((((..-(....)...)))))))))...-------......(((((((.---....))).)))).)))))).))).)))))). ( -34.60)
>consensus
AUCG___UCGCA___AUUGGGCGCUUCUUUUCAGCACCGGACAUGUUAACGACAUCGCUGUUAAA_______UGUUAAGUGUACCG___CCAUGGUCACACUGCCCGACUGCUGGCGAUA
((((...((((...((((((((..........(((((((((..((....))..)))))))))...............(((((((((......)))).))))))))))))).)))))))). (-23.26 = -25.58 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:02 2006