Locus 7001

Sequence ID 2L_DroMel_CAF1
Location 19,499,004 – 19,499,114
Length 110
Max. P 0.985569
window11165

overview

Window 5

Location 19,499,004 – 19,499,114
Length 110
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 70.23
Mean single sequence MFE -35.47
Consensus MFE -21.29
Energy contribution -22.57
Covariance contribution 1.28
Combinations/Pair 1.19
Mean z-score -2.06
Structure conservation index 0.60
SVM decision value 2.01
SVM RNA-class probability 0.985569
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19499004 110 + 22407834
AGUGGUUUCAAAUGAUUCCACAUUUAGAUUUCGACUUCAGGCGUGAACUGGCGUCAGAAGUAGAUCUCCUCUUCCUCGGGCUUGGCUCGAGGAGCUGUGCCAG---UGGCCAC
.((((..((....))..))))..................(((....(((((((.(((....(((.....)))(((((((((...))))))))).)))))))))---).))).. ( -41.30)
>DroVir_CAF1 16601 101 + 1
AUU---UUUGGG---------CUUUAUAUUUCGACCUCUGGCGUGAAUUUGCGUCAGAAGUAAAUCUCCUCCUCCUCGGGUUUGGCGCGUGGAGCCUGCCCGGAGUUGGCCAA
...---....((---------((..........((.((((((((......)))))))).))..........((((..((((..(((.......))).))))))))..)))).. ( -34.20)
>DroPse_CAF1 17273 85 + 1
----------------------CUUAGAUUUCGACUUCUGGCGUGAACUGGCGUCAGAAAUAGAUCUCCUCCUCCUCGGGCUUGGCUCGCGGAGCCGUGCCCG---U---CCC
----------------------...((((((....(((((((((......)))))))))..)))))).........(((((.((((((...)))))).)))))---.---... ( -33.10)
>DroMoj_CAF1 17456 110 + 1
GGG---GUUGGCUGCUUAAAUUUUUAGAUUUCUACCUCUGGCGUGAAUUUGCGUCAGAAGUAGAUCUCCUCCUCCUCGGGCUUGGCGCGUGGCGCUUGCCCCGAAUUGCCCAG
.((---((..................((..(((((.((((((((......)))))))).)))))..)).......(((((...(((((...)))))...)))))...)))).. ( -41.10)
>DroAna_CAF1 14023 101 + 1
UUUAGUUUGGAA---------UCUUAGAUUUCGACUUCUGGCGUAAAUUGGCGUCAAAAGUAAAUCUCCUCCUCUUCGGCCUUGGCCCGCGGUGCUGUCCCAC---CGCCUAC
........(((.---------....((((((..((((.((((((......)))))).))))))))))..))).....(((....))).((((((......)))---))).... ( -30.00)
>DroPer_CAF1 15337 85 + 1
----------------------CUUAGAUUUCGACUUCUGGCGUGAACUGGCGUCAGAAAUAGAUCUCCUCCUCCUCGGGCUUGGCUCGCGGAGCCGUGCCCG---U---CCC
----------------------...((((((....(((((((((......)))))))))..)))))).........(((((.((((((...)))))).)))))---.---... ( -33.10)
>consensus
__U___UU_G____________CUUAGAUUUCGACUUCUGGCGUGAACUGGCGUCAGAAGUAGAUCUCCUCCUCCUCGGGCUUGGCUCGCGGAGCCGUCCCCG___UG_CCAC
.........................((((((..(((((((((((......)))))))))))))))))....((((.(((((...))))).))))................... (-21.29 = -22.57 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:56 2006