Locus 7000

Sequence ID 2L_DroMel_CAF1
Location 19,475,367 – 19,475,465
Length 98
Max. P 0.709398
window11164

overview

Window 4

Location 19,475,367 – 19,475,465
Length 98
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 84.55
Mean single sequence MFE -28.40
Consensus MFE -21.76
Energy contribution -22.00
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.74
Structure conservation index 0.77
SVM decision value 0.37
SVM RNA-class probability 0.709398
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19475367 98 - 22407834
----CAUAUGCAUGUUUGUGUGUAUAAGCCAUGUUGGUAUACUGGACAACAUAGCGCUGCACUUCGGCACAUGUGCAAAAUGUGCAAUUUCGUUAGCGGCGC
----..(((((((......)))))))....((((((..........)))))).(((((((((....((((((.......))))))......))..))))))) ( -29.30)
>DroSec_CAF1 31042 96 - 1
----CAUAUGCAUGUAU--GAGUAUAAGGCAUGUUGGUGUACUGGACAACAUAGCGCUGCACUUCGGCACAUGUGCAAAAUGUGCAAUUUCGUUAGCGGCGU
----..(((((......--..)))))..((((((((..........)))))).))(((((((....((((((.......))))))......))..))))).. ( -25.30)
>DroSim_CAF1 32172 96 - 1
----CAUAUGCAAGUAU--GUGUAUAAGCCAUGUUGGUGUACUGGACAACAUAGCGCUGCACUUCGGCACAUGUGCAAAAUGUGCAAUUUCGUUAGCGGCGC
----..((((((.....--.))))))....((((((..........)))))).(((((((((....((((((.......))))))......))..))))))) ( -27.50)
>DroEre_CAF1 30978 100 - 1
GAUAUGUAUGUAUGUGU--GUGUAAAAGCCAAGUUGGUAUACCAUACAACAUAGCGCUGCACUUCGGCACAUGUGCAAAAUGUGCAAUUUCGAUAGCGGCGC
......(((((.(((((--(.(((...(((.....))).))))))))))))))(((((((...(((((((((.......)))))).....)))..))))))) ( -35.20)
>DroYak_CAF1 32062 88 - 1
--UACGUAUGUAU------------UAACCAUGUUGGUAUACUAUACAACAUAGCGCUGCAUUUCGGCCCAUGUGCAAAAUGUGCAAUUUCGUUAGCGGCGC
--...((((((((------------..(((.....))))))).))))......(((((((.(..(((....((..(.....)..))...)))..)))))))) ( -24.70)
>consensus
____CAUAUGCAUGUAU__GUGUAUAAGCCAUGUUGGUAUACUGGACAACAUAGCGCUGCACUUCGGCACAUGUGCAAAAUGUGCAAUUUCGUUAGCGGCGC
..............................((((((..........)))))).(((((((....((((((((.......)))))).....))...))))))) (-21.76 = -22.00 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:55 2006