Locus 7

Sequence ID 2L_DroMel_CAF1
Location 28,825 – 28,939
Length 114
Max. P 0.679418
window11

overview

Window 1

Location 28,825 – 28,939
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 76.36
Mean single sequence MFE -37.00
Consensus MFE -21.84
Energy contribution -21.32
Covariance contribution -0.53
Combinations/Pair 1.36
Mean z-score -1.54
Structure conservation index 0.59
SVM decision value 0.30
SVM RNA-class probability 0.679418
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 28825 114 + 22407834
AAAUAGGGUCAGGGCGGGACGGUGGGUAACGGUAUAUAUCCACAAACUCUUGAGCCUUUGAUACAAUUGUUCCCGAUGGCUUAAGUGUUGGCCGCGUUCGUCUUAAAAAAUUUU
...(((((..((.((((....(((((((........))))))).(((.((((((((.(((..((....))...))).)))))))).)))..)))).))..)))))......... ( -36.30)
>DroVir_CAF1 51411 113 + 1
AAAGUGGAUCCGGUCGGGAAGGCGGAUAUCUGUAUAUGUCCACAAACUCUUGAGCCUUUGAGACUAUUGUGCCAGCCGGCUUAAGCGUUGGACGCGUCCGUCUGU-GGGUGUUC
..(((((((..((((..((((((((((((......)))))).(((....))).))))))..))))...((((((((..((....))))))).)))))))).))..-........ ( -35.90)
>DroPse_CAF1 6477 113 + 1
AUAUGGGGUCCGGCCGCGUUGGUGGAUAUCUAUAUAUAUCUACAAAUUCUUGAGCCUUUGAGACAAUAGUUCCAGAUGGCUUAAGCGUGGGACGUGUUCGUCUGCAA-UGUCAU
...((.((..((..((((((.((((((((......))))))))..((.((((((((((((..((....))..)))).)))))))).))..))))))..)).)).)).-...... ( -37.60)
>DroGri_CAF1 4269 114 + 1
AUAGCGGAUCAGGUCGAGAUGGUGGAUUUCUGUAAACGUCCACAAACUCUUGGGCCUUCGAUACAAUUGUGCCAGAUGGUUUGAGCGUUGGACGUGUCCGCCUGAGAAGGGAAC
...(((((.((.(((......((((((..........)))))).(((.((..((((.((..(((....)))...)).))))..)).))).))).)))))))............. ( -36.10)
>DroMoj_CAF1 4909 114 + 1
AAAUGGGAUCCGGUCGGCUUGGCGGAUAUUUAUAAAUGUCCACAAAUUCUUGAGCCUUCGAUACAAUUGUUCCUGCUGGCUUAAGGGUGGGACGUGUGCGCCUGGCGAUUGCAU
..........((((((.(..((((.((((........((((....(((((((((((..((..((....))...))..))))))))))).)))))))).)))).).))))))... ( -38.50)
>DroPer_CAF1 6510 113 + 1
AUAUGGGGUCCGGCCGCGUUGGUGGAUAUCUAUAUAUAUCUACAAAUUCUUGAGCCUUUGAGACAAUAGUUCCAGAUGGCUUAAGCGUGGGACGUGUUCGUCUGCAA-UGUCAU
...((.((..((..((((((.((((((((......))))))))..((.((((((((((((..((....))..)))).)))))))).))..))))))..)).)).)).-...... ( -37.60)
>consensus
AAAUGGGAUCCGGUCGGGAUGGUGGAUAUCUAUAUAUAUCCACAAACUCUUGAGCCUUUGAGACAAUUGUUCCAGAUGGCUUAAGCGUGGGACGUGUUCGUCUGAAAAUGGCAU
.....(((..((.((......((((((((......))))))))..((.((((((((...(..((....))..)....)))))))).)).)).))..)))............... (-21.84 = -21.32 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:06 2006