Locus 6995

Sequence ID 2L_DroMel_CAF1
Location 19,454,613 – 19,454,703
Length 90
Max. P 0.633322
window11155

overview

Window 5

Location 19,454,613 – 19,454,703
Length 90
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 79.12
Mean single sequence MFE -16.07
Consensus MFE -10.71
Energy contribution -10.29
Covariance contribution -0.41
Combinations/Pair 1.21
Mean z-score -1.34
Structure conservation index 0.67
SVM decision value 0.21
SVM RNA-class probability 0.633322
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19454613 90 + 22407834
AUAAAGGACAGCGACAUUUGUGCGAUUAAAGCGACAAGAUUAAAAAAUUUAUUGCGCAAAUAUUUAUGGGGGGACAGUAACACAG---UGGCA---
..........((.(((((((((((((........................)))))))))))..((((..(....).))))....)---).)).--- ( -18.16)
>DroPse_CAF1 14991 82 + 1
AUAAAAGGCAGCGACAUUUGUGCGAUUAAAGCGACAAGAUUAAAAAAUUUAUUGCGCAAAUAUUUAUGGGUGGACAGUA-----------GCA---
.......((.((...(((((((((((........................))))))))))).....((......)))).-----------)).--- ( -13.46)
>DroGri_CAF1 10608 82 + 1
----------GCGCCAUUUGUGCGAUUAAAGCGACAAGAUUAAAAAAUUUAUUGCACAAAUAUUUAUG-GGGGACAGUAGCCCAACAAAAAAA---
----------.....(((((((((((........................))))))))))).....((-((.........)))).........--- ( -14.66)
>DroMoj_CAF1 13520 86 + 1
----------GCGCCAUUUGGGCGAUUAAAGCGACAAGAUUAAAAAAUUUAUUGCUCAAAUAUUUAUAGGGGAGAAGCAUCCCAAAAAACACAAAG
----------.((((.....))))(((..(((((..(((((....))))).)))))..)))........((((......))))............. ( -16.30)
>DroAna_CAF1 10446 88 + 1
AUAAAAGGCAGCGACAUUUGUGCGAUUAAAGCGACAAGAUUAAAAAAUUUAUUGCACAAAUAUUUAUGGGGGGACAGUAACA--G---UGGCA---
..........((.(((((((((((((........................)))))))))))..((((..(....).))))..--)---).)).--- ( -18.56)
>DroPer_CAF1 16143 82 + 1
AUAAAAGGCAGCGACAUUUGUGCGAUUAAAGCGACAAGAUUAAAAAAUUUAUUGCGCAAAUAUUUAUGGGGGGACAGUA-----------GCA---
.......((.((...(((((((((((........................)))))))))))........(....).)).-----------)).--- ( -15.26)
>consensus
AUAAAAGGCAGCGACAUUUGUGCGAUUAAAGCGACAAGAUUAAAAAAUUUAUUGCGCAAAUAUUUAUGGGGGGACAGUA_C_________GCA___
..........((...(((((((((((........................)))))))))))........(....).)).................. (-10.71 = -10.29 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:47 2006