| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,448,583 – 19,448,690 |
| Length | 107 |
| Max. P | 0.628989 |
| Location | 19,448,583 – 19,448,690 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 93.19 |
| Mean single sequence MFE | -29.67 |
| Consensus MFE | -27.30 |
| Energy contribution | -27.97 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.628989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19448583 107 + 22407834 GAAUGCGCACUGUACCCACGGUGAAAAAA-AAAAACAAAACGCGCGCCCGCGCAUUGCGUAAAUGCCGUCCAGACAAACGCUGCAAUGGAAUGGGACUUGGCCAACAU ...((((((((((....))))).......-...........((((....))))...)))))...(((((((...((..........)).....))))..)))...... ( -25.10) >DroSec_CAF1 4505 108 + 1 GAAUGCGCACUGUACCCACGGUGGAAAAAAAAAAACAAAACGCGCGCCCGCGCAUUGCGUAAAUUCCGUUCAGACGAAAGCUGGAAUGGAAUGGGACUUGGCCAAAAU ...((((((((((....)))))...................((((....))))...))))).(((((((((((.(....))).))))))))).((......))..... ( -32.50) >DroSim_CAF1 3845 107 + 1 GAAUGCGCACUGUACCCACGGCGGAAAAA-AAAAACAAAACGCGCGCCCGCGCAAUGCAUAAAUUCCGUUCAGACGAAAGCUGGAAUGGAAUGGGACUUGGCCAACAU ...((.((...((.(((............-...........((((....)))).........(((((((((((.(....))).))))))))))))))...)))).... ( -31.40) >consensus GAAUGCGCACUGUACCCACGGUGGAAAAA_AAAAACAAAACGCGCGCCCGCGCAUUGCGUAAAUUCCGUUCAGACGAAAGCUGGAAUGGAAUGGGACUUGGCCAACAU ...((.((...((.(((........................((((....)))).........(((((((((((.(....)))).)))))))))))))...)))).... (-27.30 = -27.97 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:46 2006