Locus 6992

Sequence ID 2L_DroMel_CAF1
Location 19,446,790 – 19,446,910
Length 120
Max. P 0.830339
window11151

overview

Window 1

Location 19,446,790 – 19,446,910
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.39
Mean single sequence MFE -33.22
Consensus MFE -20.66
Energy contribution -20.25
Covariance contribution -0.41
Combinations/Pair 1.41
Mean z-score -1.92
Structure conservation index 0.62
SVM decision value 0.71
SVM RNA-class probability 0.830339
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19446790 120 - 22407834
AUGGGCCAAGUUCAAGGCCCAAAAUGACAUUGCCAAGACGGGCGGUCGCAAGUCAAGCAAGAUCAAGGGCAUUCCCAAGCUGGAGGACGCUAACGAGGCGGGUGGAAAGAACUCGAUUAA
.((((((........))))))........((((...(((..((....))..)))..))))((((.((..(.(((((..(((...(........)..)))..).)))).)..)).)))).. ( -37.10)
>DroVir_CAF1 3627 120 - 1
CUGGGCCAAGUUUAAGGCACAGAAUGAUAUUGCCAAAACUGGCGGCAAGAAAUCAUCUAAAAUCAAAGGCAUACCCAAGCUGGAGGAUGCCAAUGAGGCAGGCACAAAAAAUUCCAUAAU
.(((((((.((((..((((...........)))).)))))))).((.(((.....)))....(((..(((((.(((.....)).).)))))..))).))..............))).... ( -27.20)
>DroGri_CAF1 2837 120 - 1
UUGGGCCAAGUUCAAGGCACAAAACGAUAUUGCCAAAACCGGCGGCAAGAAGUCGUCCAAAAUUAAGGGUAUUCCCAAGCUAGAGGAUGCCAACGAGGCGGGCACCAAAAACUCCAUACA
(((((((..((((..(((.....(((((.(((((.........)))))...)))))..........(((....)))..)))...))))(((.....))).))).))))............ ( -33.20)
>DroEre_CAF1 2720 120 - 1
GUGGGCCAAGUUCAAGGCCCAAAAUGACAUUGCCAAGACGGGCGGUCGCAAGUCAAGCAAGAUCAAGGGCAUUCCCAAGCUGGAGGACGCUAACGAGGCUGGUGGAAAGAAUUCUAUUAA
.((((((........))))))...(((..((((...(((..((....))..)))..))))..)))..(((.(((((.....)).))).)))........((((((((....)))))))). ( -36.00)
>DroWil_CAF1 3053 120 - 1
UUGGGCUAAAUUUAAGGCCCAAAAUGAUAUAGCCAAAACGGGUGGCAGAAAAUCUGGCAAAAUUAAGGGUAUACCCAAGCUGGAAGACGCAAACGAGGCUGGUGGCAAAAAUUCCAUUCA
(((((((........))))))).......(((((....(((.((.(((.....))).)).......(((....)))...))).....((....)).)))))((((........))))... ( -31.60)
>DroMoj_CAF1 2857 120 - 1
AUGGGCCAAAUUCAAGGCCCAGAAUGAUAUUGCCAAAACGGGUGGCAAGAAAUCUCAUAAGAUCAAGGGCAUACCCAAAUUAGAAGAUGCCAACGAGGCAGGUACCAAGAACUCUAUCAA
.((((((........))))))...((((..((((.....(((((((.....((((....)))).....)).)))))...........((((.....))))))))...((....)))))). ( -34.20)
>consensus
AUGGGCCAAGUUCAAGGCCCAAAAUGAUAUUGCCAAAACGGGCGGCAAGAAAUCAAGCAAAAUCAAGGGCAUACCCAAGCUGGAGGACGCCAACGAGGCAGGUACAAAAAACUCCAUUAA
.((((((........)))))).........((((....(.(((....((.......))........(((....)))..))).).....(((.....))).))))................ (-20.66 = -20.25 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:43 2006