| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,439,619 – 19,439,739 |
| Length | 120 |
| Max. P | 0.961314 |
| Location | 19,439,619 – 19,439,739 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.72 |
| Mean single sequence MFE | -42.34 |
| Consensus MFE | -37.53 |
| Energy contribution | -37.03 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.961314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19439619 120 - 22407834 UCCCAAAAACAUGUGGCUGCAGAUACCCUUCUUCUGUGGCCAUGCAGCCGAGUGCUGGGAACCCGGCAGCAGUUGGGCCUUGGACCAGGCCAAGCGCAAUCUAGUCAACGAAUACUUCCU ............(((((..((((.........))))..)))))((.((....((((((....)))))))).(((.(((((......))))).)))))....................... ( -40.30) >DroVir_CAF1 13591 120 - 1 UCCCAGAAAUAUGUGGCUACAAAUUCCGUUCUUUUGUGGCCACGCUGCCGAGUGCUGGGAACCCGGCAGCGACUGGGCCUUGAAACAGGCCAAGCACAAUUUGGUUAAUGAAUAUUUCCU .....((((((((((((((((((.........)))))))))))...((((((((((((....))))).((.....(((((......)))))..))...)))))))......))))))).. ( -47.20) >DroGri_CAF1 14529 120 - 1 UCCCAAAAAUAUGUGGCUGCAAAUACCAUUCUUUUGUGGGCACGCUGCCGAGUGCUGGGAACCCGGCAGUGAUUGGGCCUUAAAGCAGGCCAAGCGCAAUUUGGUCAACGAGUACUUCUU ............(((.(..((((.........))))..).)))(.(((((((((((((....))))).(((....(((((......)))))...))).)))))).)).)........... ( -38.90) >DroWil_CAF1 39692 120 - 1 UCCAAAAAAUAUGUGGCUACAAAUACCUUUCUUUUGUGGCCAUGCUGCCGAGUGCUGGGAACCUGGCAGUGUUUGGGCCCUAGAUCAGGCCAAACGUAAUUUGGUCAAUGAAUAUUUUCU .(((((......(((((((((((.........)))))))))))(((((((.((.......)).)))))))((((((.((........))))))))....)))))................ ( -39.20) >DroMoj_CAF1 15498 120 - 1 UCCCAAAAAUAUGUGGCUGCAAAUUCCAUUCUUUUGUGGCCACGCUGCUGAGUGCUGGGAACCCGGCAGCGAUUGGGCCUUGAAGCAGGCCAAACACAAUUUGGUCAACGAAUAUUUUCU .(((((......(((((..((((.........))))..)))))(((((((.((.......)).)))))))..)))))..........(((((((.....)))))))...(((....))). ( -43.60) >DroAna_CAF1 16194 120 - 1 UCCAAAGAAUAUGUGGCUGCAAAUACCCUUUUUCUGUGGCCAUGCCGCCGAGUGCUGGGAACCCGGCAGUGCUUGGGCUUUGGACCAGGCCAAGCGGAACCUGGUCAACGAAUAUUUUCU ..(((((.....(((((..((.............))..)))))....(((((((((((....)))))...)))))).)))))(((((((((....))..)))))))...(((....))). ( -44.82) >consensus UCCCAAAAAUAUGUGGCUGCAAAUACCAUUCUUUUGUGGCCACGCUGCCGAGUGCUGGGAACCCGGCAGCGAUUGGGCCUUGAACCAGGCCAAGCGCAAUUUGGUCAACGAAUAUUUCCU .(((((......(((((((((((.........)))))))))))(((((((.((.......)).)))))))..)))))..........(((((((.....))))))).............. (-37.53 = -37.03 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:42 2006