Locus 6990

Sequence ID 2L_DroMel_CAF1
Location 19,422,618 – 19,422,735
Length 117
Max. P 0.534389
window11149

overview

Window 9

Location 19,422,618 – 19,422,735
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.03
Mean single sequence MFE -24.93
Consensus MFE -17.64
Energy contribution -18.70
Covariance contribution 1.06
Combinations/Pair 1.07
Mean z-score -1.58
Structure conservation index 0.71
SVM decision value 0.00
SVM RNA-class probability 0.534389
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19422618 117 + 22407834
AAUC---AAGUGGUAAACUUAACUAAAAUACUUAUCAACUUACCGCUGUCGAUAAUACCAACCAACGGUUUAAAACUAACUGUUGGAAAGUUGGUAGGUGUUCCAACUGGAAUUCUCGUC
....---.((((((((.......................))))))))..(((.(((.((..(((((((((.......)))))))))..((((((........)))))))).))).))).. ( -31.00)
>DroSec_CAF1 25258 117 + 1
AAUC---AAGUGGUAAACUUAACUAAAAUACUCAUCAACUUACCGCUGUAGAUAAUACCAAAAAACGGUUUAAAACUAACUGUUGGAAAGUGUGUAGGUGUUCCAACUGGAAUUCUCGUU
.(((---.((((((((.......................))))))))...))).((((.....(((((((.......))))))).....))))...((.(((((....))))).)).... ( -21.20)
>DroSim_CAF1 25759 117 + 1
AAUC---AAGUGGUAAACUUAACUAAAAUACUCAUCAACUUACCGCUGUAGAUAAUACCAAAAAACGGUUUAAAACUAACUGUUGGAAAGUGGGUAGGUGUUCCAACUGGAAUUCUCGUU
.(((---.((((((((.......................))))))))...)))....(((...(((((((.......)))))))......)))(..((.(((((....))))).))..). ( -22.50)
>DroYak_CAF1 25795 119 + 1
UAUCUUACCGUGGUAAACUUACCUAAAAUACUCAUUAUCUUACCGCUGUAAAU-AUACCAACCAACGUUUUGAAACUACCAGUUGGAAAGUUGGUAGGUGUUCUAACUGGAUCUCUCGUU
....((((.(((((((.......................))))))).))))..-(((((.((((((.((((..(((.....))).)))))))))).)))))...(((.((....)).))) ( -25.00)
>consensus
AAUC___AAGUGGUAAACUUAACUAAAAUACUCAUCAACUUACCGCUGUAGAUAAUACCAAAAAACGGUUUAAAACUAACUGUUGGAAAGUGGGUAGGUGUUCCAACUGGAAUUCUCGUU
........((((((((.......................)))))))).......(((((.((((((..((...(((.....))).))..)))))).)))))(((....)))......... (-17.64 = -18.70 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:41 2006