Locus 6989

Sequence ID 2L_DroMel_CAF1
Location 19,421,937 – 19,422,029
Length 92
Max. P 0.709688
window11148

overview

Window 8

Location 19,421,937 – 19,422,029
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 84.06
Mean single sequence MFE -28.75
Consensus MFE -19.28
Energy contribution -20.68
Covariance contribution 1.39
Combinations/Pair 1.18
Mean z-score -2.88
Structure conservation index 0.67
SVM decision value 0.37
SVM RNA-class probability 0.709688
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19421937 92 + 22407834
UCGACUUCCUGUGUCGCCACCUGGCGGCCAACGGCAGAAUCCUCAGCUACAUGUUAAUUAACUCCAAUUAGCGACUGACCUUGAAGUCGCAG
.(((((((((((((((((....)))))).....)))).....((((.....((((((((......)))))))).))))....)))))))... ( -27.60)
>DroSec_CAF1 24574 92 + 1
UCGACUUCCUGUGUCGCCACCUGGCGGCCAACGUCAGAAUCCUCAGCUGCAUGUUAAUUAACUCCAAUUAGCGACUGACCUUGAAGUCGCAG
.(((((((.((.((((((....))))))))..(((((....(......)..((((((((......)))))))).)))))...)))))))... ( -28.80)
>DroSim_CAF1 25079 92 + 1
CCGACUUCCUGUGUCGCCACCUGGCGGCCAACGUCAGAAUCCUCAGCUGCAUGUUAAUUAACUCCAAUUAGCGACUGACCUUGAAGUCGCAG
.(((((((.((.((((((....))))))))..(((((....(......)..((((((((......)))))))).)))))...)))))))... ( -29.00)
>DroEre_CAF1 24081 92 + 1
GCGACUUCCUGUGUCGCCACCUGGCGGCCAACGUCAGAAUCCUCUGCUGCAUGUUAAUUAACUUCAAUUAACAACUGACCUUGAAGUCGCAC
((((((((.((.((((((....))))))))..(((((....(......)..((((((((......)))))))).)))))...)))))))).. ( -34.10)
>DroYak_CAF1 25108 92 + 1
GCGACUUCCUGUGCCGCCACCUGGCGGCCAAUGUCAGAAUCCUCUGCUGCAUGUUAAUUAACUCCAAUUAACAACUGACCUUGAAGUCGCAG
((((((((.((.((((((....))))))))..(((((....(......)..((((((((......)))))))).)))))...)))))))).. ( -36.50)
>DroAna_CAF1 27378 77 + 1
-UAAUUUACAGUAACGCCACCUAGCGGCCAAUGCCAGAC-------------ACUAAUUAACUCCAAUUAGCGGGUGACCUUGAAGGG-GAG
-........(((...((......))(((....)))....-------------)))......((((..((...((....))...))..)-))) ( -16.50)
>consensus
GCGACUUCCUGUGUCGCCACCUGGCGGCCAACGUCAGAAUCCUCAGCUGCAUGUUAAUUAACUCCAAUUAGCGACUGACCUUGAAGUCGCAG
.(((((((.((.((((((....))))))))..(((((..............((((((((......)))))))).)))))...)))))))... (-19.28 = -20.68 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:40 2006