Locus 6988

Sequence ID 2L_DroMel_CAF1
Location 19,421,539 – 19,421,634
Length 95
Max. P 0.798987
window11147

overview

Window 7

Location 19,421,539 – 19,421,634
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 93.68
Mean single sequence MFE -20.35
Consensus MFE -17.95
Energy contribution -18.40
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.20
Structure conservation index 0.88
SVM decision value 0.61
SVM RNA-class probability 0.798987
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19421539 95 + 22407834
UGGACCCAUGUACAUAUGAACGGGUUCAAAGAUAAGACGAGCACUUGAAAUUCAUCAUCAAGAAUUUUAAAGCACGUAACACAACCAUUUUUAAU
(((((((..............)))))))........(((.((..(((((((((........))))))))).)).))).................. ( -19.14)
>DroSec_CAF1 24173 95 + 1
UGGACCUAUGUACAAAUGAAUGGGUUCAAAGAUAAGACGAGCACUUGAAAUACACCAUCAAGAAUUUUAAGGCACGUAACACAGCCAUUUUUAAU
(((((((((..........)))))))))........(((.((.((((((((.(........).)))))))))).))).................. ( -20.50)
>DroSim_CAF1 24678 95 + 1
UGGACCUAUGUACAAAUGAAUGGGUUCAAAGAUAAGACGAGCACUUGAAAUACACCACCAAGAAUUUUAAGGCACGUAACACAGUCAUUUUUAAU
(((((((((..........)))))))))..(((...(((.((.((((((((.(........).)))))))))).)))......)))......... ( -21.40)
>consensus
UGGACCUAUGUACAAAUGAAUGGGUUCAAAGAUAAGACGAGCACUUGAAAUACACCAUCAAGAAUUUUAAGGCACGUAACACAGCCAUUUUUAAU
(((((((((..........)))))))))........(((.((.((((((((.(........).)))))))))).))).................. (-17.95 = -18.40 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:39 2006