Locus 6987

Sequence ID 2L_DroMel_CAF1
Location 19,416,582 – 19,416,693
Length 111
Max. P 0.945620
window11145 window11146

overview

Window 5

Location 19,416,582 – 19,416,693
Length 111
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 86.31
Mean single sequence MFE -25.14
Consensus MFE -18.91
Energy contribution -19.24
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -3.21
Structure conservation index 0.75
SVM decision value 1.35
SVM RNA-class probability 0.945620
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19416582 111 + 22407834
UCUUCAUCUGAAGUGAUUACUCUACUUAAGAUGCACCUUAAUCUU-CCGUAUCUAAAGAUCAAAAAGAUAGAGAAGUCAAAAAUGGUUCUUUAUAGCGUAAUCACUGAAGAU
.....((((..(((((((((.((.(((.((((((...........-..)))))).))).........((((((((.(((....))))))))))))).)))))))))..)))) ( -29.82)
>DroSec_CAF1 19475 112 + 1
UCUUUAUCUCAACUGAUUACACUACUUAAGAUGCAGCUCAUCCUAAACGUAACUAAAGACCAAAAAGAUAGAGAAGUCAAAAAUGGUUCUUUAUAGAGUAAUCACUGAAGAU
.....((((((..(((((((.(((.(((.((((.....)))).))).......(((((((((....(((......))).....))).))))))))).))))))).)).)))) ( -19.90)
>DroSim_CAF1 20071 104 + 1
U--------UAAGUGAUUACUCUACUUAAGAUGCAGCUCAAUCUAAACGUAACUAAAGAUCAAAAAGAUAGAGAAGUCAAAAGUGGUUCUUUAUAGAGUAAUCACUGAAGAU
.--------..(((((((((((((....((((........)))).........(((((((((....(((......))).....))).)))))))))))))))))))...... ( -25.70)
>consensus
UCUU_AUCUCAAGUGAUUACUCUACUUAAGAUGCAGCUCAAUCUAAACGUAACUAAAGAUCAAAAAGAUAGAGAAGUCAAAAAUGGUUCUUUAUAGAGUAAUCACUGAAGAU
...........(((((((((.((.(((.((.(((..............))).)).))).........((((((((.(((....))))))))))))).)))))))))...... (-18.91 = -19.24 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 19,416,582 – 19,416,693
Length 111
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 86.31
Mean single sequence MFE -28.50
Consensus MFE -16.45
Energy contribution -18.23
Covariance contribution 1.78
Combinations/Pair 1.09
Mean z-score -3.52
Structure conservation index 0.58
SVM decision value 0.33
SVM RNA-class probability 0.692774
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19416582 111 - 22407834
AUCUUCAGUGAUUACGCUAUAAAGAACCAUUUUUGACUUCUCUAUCUUUUUGAUCUUUAGAUACGG-AAGAUUAAGGUGCAUCUUAAGUAGAGUAAUCACUUCAGAUGAAGA
((((..(((((((((.((((.((((..((((((...(((((.(((((...........))))).))-)))...))))))..))))..)))).)))))))))..))))..... ( -31.60)
>DroSec_CAF1 19475 112 - 1
AUCUUCAGUGAUUACUCUAUAAAGAACCAUUUUUGACUUCUCUAUCUUUUUGGUCUUUAGUUACGUUUAGGAUGAGCUGCAUCUUAAGUAGUGUAAUCAGUUGAGAUAAAGA
(((((.(.(((((((.(((((((((.(((.....((........))....)))))))))......(((((((((.....)))))))))))).))))))).).)))))..... ( -29.00)
>DroSim_CAF1 20071 104 - 1
AUCUUCAGUGAUUACUCUAUAAAGAACCACUUUUGACUUCUCUAUCUUUUUGAUCUUUAGUUACGUUUAGAUUGAGCUGCAUCUUAAGUAGAGUAAUCACUUA--------A
......((((((((((((((.((((........(((((.....(((.....)))....))))).((((.....))))....))))..))))))))))))))..--------. ( -24.90)
>consensus
AUCUUCAGUGAUUACUCUAUAAAGAACCAUUUUUGACUUCUCUAUCUUUUUGAUCUUUAGUUACGUUUAGAUUGAGCUGCAUCUUAAGUAGAGUAAUCACUUAAGAU_AAGA
(((((.(((((((((.((((.((((..((....)).............((((((((............)))))))).....))))..)))).))))))))).)))))..... (-16.45 = -18.23 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:38 2006