| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,410,450 – 19,410,549 |
| Length | 99 |
| Max. P | 0.799515 |
| Location | 19,410,450 – 19,410,549 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 97.31 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -23.80 |
| Energy contribution | -23.47 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.799515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19410450 99 + 22407834 AGCGGUGGAAAAAAGCUUUUGCGACGAAGAUUUGAGAUUUUCUCUCUUGAGUGUUUUUCUUUGAGUUGUGUUCUCUCAAAAGAGAGGGAAAGAGUUAAA ......(((((((.((((..(.((.(((((((...))))))))).)..)))).)))))))((((.((...(((((((....)))))))...)).)))). ( -25.00) >DroSec_CAF1 13408 99 + 1 AGCGGUGGAAAAAAGCUUUUGCGACGAAGAUUUGAGAUUUUCUCUCUUGAGUGUUUUUCUUUGCGUUGUGUUCUCUUAAAAGAGAGAGAAAGAGUUAAA .((((.(((((((.((((..(.((.(((((((...))))))))).)..)))).)))))))))))......(((((((......)))))))......... ( -24.80) >DroSim_CAF1 13639 99 + 1 AGCGGUGGAAAAAAGCUUUUGCGACGAAGAUUUGAGAUUUUCUCUCUUGAGUGUUUUUCUUUGCGUUGUGUUCUCUUAAAAGAAAGAGAAAGAGUUAAA .((((.(((((((.((((..(.((.(((((((...))))))))).)..)))).)))))))))))......(((((((......)))))))......... ( -24.40) >consensus AGCGGUGGAAAAAAGCUUUUGCGACGAAGAUUUGAGAUUUUCUCUCUUGAGUGUUUUUCUUUGCGUUGUGUUCUCUUAAAAGAGAGAGAAAGAGUUAAA ((((..(((((((.((((..(.((.(((((((...))))))))).)..)))).)))))))...))))...(((((((......)))))))......... (-23.80 = -23.47 + -0.33)
| Location | 19,410,450 – 19,410,549 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 97.31 |
| Mean single sequence MFE | -14.47 |
| Consensus MFE | -12.49 |
| Energy contribution | -12.93 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19410450 99 - 22407834 UUUAACUCUUUCCCUCUCUUUUGAGAGAACACAACUCAAAGAAAAACACUCAAGAGAGAAAAUCUCAAAUCUUCGUCGCAAAAGCUUUUUUCCACCGCU .............(((((....))))).............((((((.......((((.....))))...........((....)).))))))....... ( -14.50) >DroSec_CAF1 13408 99 - 1 UUUAACUCUUUCUCUCUCUUUUAAGAGAACACAACGCAAAGAAAAACACUCAAGAGAGAAAAUCUCAAAUCUUCGUCGCAAAAGCUUUUUUCCACCGCU .........((((((........))))))......((...((((((.......((((.....))))...........((....)).))))))....)). ( -13.60) >DroSim_CAF1 13639 99 - 1 UUUAACUCUUUCUCUUUCUUUUAAGAGAACACAACGCAAAGAAAAACACUCAAGAGAGAAAAUCUCAAAUCUUCGUCGCAAAAGCUUUUUUCCACCGCU .........(((((((......)))))))......((...((((((.......((((.....))))...........((....)).))))))....)). ( -15.30) >consensus UUUAACUCUUUCUCUCUCUUUUAAGAGAACACAACGCAAAGAAAAACACUCAAGAGAGAAAAUCUCAAAUCUUCGUCGCAAAAGCUUUUUUCCACCGCU .........(((((((......)))))))...........((((((.......((((.....))))...........((....)).))))))....... (-12.49 = -12.93 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:32 2006