| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,406,501 – 19,406,596 |
| Length | 95 |
| Max. P | 0.529993 |
| Location | 19,406,501 – 19,406,596 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 81.68 |
| Mean single sequence MFE | -29.67 |
| Consensus MFE | -22.14 |
| Energy contribution | -22.12 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19406501 95 + 22407834 AGUUCCAUAUUGCGGCUGAGGUUGCUGCGGCUGGCCUGGCACACUGUUUUGCAGGUCGGCUAAUAGAGCAUCUAAAACGAAAAAAGAUUGAAAC---A .((((......(((((.......)))))((((((((((.((........))))))))))))....)))).........................---. ( -29.20) >DroSec_CAF1 9461 94 + 1 AGUUCCAUACUGCGGCUGGGGCUGCUGCGGCUGGCCUGGUACACUGUUUUGCAGGUCGGCUAAUAGAGCAUCUAUAACGAAGAUGGA-UGAAAA---A ...(((((.((.((..(((((((.(((.((((((((((.............))))))))))..)))))).))))...)).)))))))-......---. ( -30.72) >DroSim_CAF1 9580 94 + 1 AGUUCCAUAUUGCGGCUGGGGCUGCUGCGGCUGGCCUGGCACACUGUUUUGCAGGUCGGCUAAUAGAGCAUCUAUAACGAAGAAGGG-UGAAAC---A .(((.(((...(((((.......)))))((((((((((.((........)))))))))))).((((.....))))...........)-)).)))---. ( -29.90) >DroYak_CAF1 9433 94 + 1 AGUUCCAUAUUGCGGCUGGGGCUGCUGCGGCUGGCCUGGCACACUGUUUUGCAGGUCGGCUAAUAGAGCAUCUAUAAUGAAGAAGGG-UGAAAC---A .(((.(((...(((((.......)))))((((((((((.((........)))))))))))).((((.....))))...........)-)).)))---. ( -29.90) >DroAna_CAF1 9256 97 + 1 UGUUCCAUAUUGUGGCUGAGGUGGCUGUGGAUGGCCUGGAACACUGUUUUGCAGGUCGGCAAGGAGAGCAUCUAGAAGGAUAAAACA-AGGAACAUGA ((((((...((((..((.(((((.((.(...(((((((.((.......)).)))))))....).))..)))))....)).....)))-)))))))... ( -25.90) >DroPer_CAF1 9840 89 + 1 GGUUCCAUACUGGGGCUGAGGCUGUUGGGGUUGACCCGGAACACUGUUCUGCAGGUCGGCUAGAAGGGCAUCUGCAAAGAGGGAA------AUC---A ((((((...((...((.((.(((.((..((((((((((((((...))))))..))))))))..)).))).)).))..))..)).)------)))---. ( -32.40) >consensus AGUUCCAUAUUGCGGCUGAGGCUGCUGCGGCUGGCCUGGCACACUGUUUUGCAGGUCGGCUAAUAGAGCAUCUAUAACGAAGAAAGA_UGAAAC___A .((((......(((((....)))))...((((((((((.............))))))))))....))))............................. (-22.14 = -22.12 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:30 2006