Locus 698

Sequence ID 2L_DroMel_CAF1
Location 2,017,739 – 2,017,841
Length 102
Max. P 0.634757
window1144

overview

Window 4

Location 2,017,739 – 2,017,841
Length 102
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 77.22
Mean single sequence MFE -30.90
Consensus MFE -22.34
Energy contribution -21.98
Covariance contribution -0.36
Combinations/Pair 1.16
Mean z-score -1.02
Structure conservation index 0.72
SVM decision value 0.21
SVM RNA-class probability 0.634757
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2017739 102 - 22407834
GGACUGCGAAUGGCGCAUUGUGGUGGCCAUGGCAAUGGAGUUUAUUUCCGACUCGGGCGACCACAUGGUGAUCUCAC---U---UCCUUUUGCA---CUUAGCUAUCCAGU-
(((..((....((.(((.((((((.(((.(((...(((((.....)))))..)))))).)))))).((((....)))---)---......))).---))..))..)))...- ( -35.00)
>DroVir_CAF1 25127 100 - 1
GGACUGCGAGUGUCGCAUUGUGGUGGCCAUGGCAAUGGAAUUUAUCUCCGAUUCGGGCGACCACAUUGUAUUAUAUCUUGU---C---------UUGAUUUGCUUUGUUGUA
.(((.(((((((..(((.((((((.(((.(((...((((.......))))..)))))).)))))).)))..)))(((....---.---------..)))))))...)))... ( -27.60)
>DroEre_CAF1 32693 102 - 1
AGACUGCGAAUGGCGCAUUGUGGUGGCCAUGGCAAUGGAGUUUAUUUCCGACUCGGGCGACCACAUCGUGAUCUCAC---U---UCCUUUUGCA---CUUAGCGUUGCUGG-
((...(((...((.(((.((((((.(((.(((...(((((.....)))))..)))))).))))))..(((....)))---.---......))).---))...)))..))..- ( -31.70)
>DroYak_CAF1 36909 102 - 1
GGACUGCGAAUGGCGCAUUGUGGUGGCCAUGGCAAUGGAGUUUAUUUCCGACUCGGGCGACCACAUGGUGAUCUCAC---U---UCCUUUUGCA---CUUUGCGUUCCAGU-
(((.(((((..((.(((.((((((.(((.(((...(((((.....)))))..)))))).)))))).((((....)))---)---......))).---))))))).)))...- ( -36.40)
>DroAna_CAF1 32678 102 - 1
UGACUGUGAAUGGCGCAUGGUGGUGGCCAUGGCAAUGGAAUUAAUUUCCGACUCUGGCGACCACAUUCUCAACUCAC---U---UCCUUUAGCA---CUUAAUGUUUAAAU-
.....((((.(((......(((((.((((.((...(((((.....))))).)).)))).)))))....)))..))))---.---..........---..............- ( -24.80)
>DroPer_CAF1 40732 105 - 1
GGACUGCGAAUGCCGCAUGGUGGUGGCCAUGGCAAUGGAAUUUAUUUCCGAUUCCGGCGACCACAUUCUGUUCACAC---GAAAACUUUUCACU---CUCCGAAUGGAAAU-
((((((((.....))))..(((((.(((..((.(((((((.....)))).)))))))).))))).....))))....---......((((((.(---(...)).)))))).- ( -29.90)
>consensus
GGACUGCGAAUGGCGCAUUGUGGUGGCCAUGGCAAUGGAAUUUAUUUCCGACUCGGGCGACCACAUUGUGAUCUCAC___U___UCCUUUUGCA___CUUAGCGUUGCAGU_
....((((.....))))..(((((.(((..((...(((((.....))))).))..))).)))))................................................ (-22.34 = -21.98 +  -0.36) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:13 2006