| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,399,541 – 19,399,643 |
| Length | 102 |
| Max. P | 0.761706 |
| Location | 19,399,541 – 19,399,643 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.72 |
| Mean single sequence MFE | -39.03 |
| Consensus MFE | -30.52 |
| Energy contribution | -30.25 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761706 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19399541 102 - 22407834 UUGCAAGAAGGCCGUUCGCGGCAAGUCCUUCUACGCCAUGGAGGGCAAGCCCGUCUGUCCACAGUGCGUGGGCGUCGACGAGGAGGAGUAGGAGAG-----AUUC------------AC- ..........((((....)))).((((((((((((((......)))...(((((((((((((.....)))))))..)))).))....))))))).)-----))).------------..- ( -40.40) >DroGri_CAF1 2928 97 - 1 UUGCAAGAAGGCUGUGCGUGGCAAGUCCUUCUAUGCCAUGGAGGGCAAGCCCGUCUGUCCGCAGUGUGUGGGCGUUGACGAGGAGGAGUAAGCA----------A------------AC- ((((......(((.(.(((((((((.....)).))))))).).)))...(((((((((((((.....)))))))..)))).))........)))----------)------------..- ( -38.00) >DroWil_CAF1 1 91 - 1 CUGCAAGAAGGCCGUGCGCGGCAAAUCCUUCUAUGCCAUGGAGGGUAAACCAGUCUGUCCACAAUGUGUGGGCGUCGAUGAGGAAGAAUAA----------------------------- ..........((((....))))..(((((((........)))))))...((.((((((((((.....)))))))..)))..))........----------------------------- ( -28.20) >DroMoj_CAF1 3568 108 - 1 UUGCAAGAAGGCUGUGCGCGGCAAGUCCUUCUAUGCCAUGGAGGGCAAGCCGGUCUGUCCGCAGUGUGUGGGCGUCGAUGAGGAGGAAUAGGCGUCCAUAACCCA------------GCA ..........(((((((..(((..(((((((........)))))))..)))((.....)))))...((((((((((.((........)).))))))))))...))------------)). ( -40.70) >DroAna_CAF1 3091 118 - 1 CUGCAAGAAGGCCGUCCGCGGCAAGUCCUUCUAUGCCAUGGAGGGCAAGCCCGUCUGCCCACAGUGCGUGGGCGUUGAUGAGGAGGAAUAAGGCGGCAGC-AUCCCCAUCCUCAUUGGC- ..((......((((....))))..(((((((........)))))))..))......((((((.....))))))((..(((((((((......((....))-....)).)))))))..))- ( -49.60) >DroPer_CAF1 2568 107 - 1 CUGCAAGAAGGCUGUGCGCGGCAAGUCCUUCUAUGCCAUGGAGGGCAAGCCCGUGUGUCCACAGUGCGUGGGCGUGGAUGAGGAGGAAUAGGGAGCCAGAUACAC------------AC- ((((......((((....))))...(((((((...((((...(((....)))....((((((.....))))))))))...))))))).......).)))......------------..- ( -37.30) >consensus CUGCAAGAAGGCCGUGCGCGGCAAGUCCUUCUAUGCCAUGGAGGGCAAGCCCGUCUGUCCACAGUGCGUGGGCGUCGAUGAGGAGGAAUAAGCA_______A__C____________AC_ ..........((((....))))...(((((((.((((......))))....(((((((((((.....)))))))..)))))))))))................................. (-30.52 = -30.25 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:27 2006