Locus 6977

Sequence ID 2L_DroMel_CAF1
Location 19,382,886 – 19,382,976
Length 90
Max. P 0.982119
window11130

overview

Window 0

Location 19,382,886 – 19,382,976
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 78.36
Mean single sequence MFE -25.74
Consensus MFE -14.94
Energy contribution -15.63
Covariance contribution 0.70
Combinations/Pair 1.29
Mean z-score -2.88
Structure conservation index 0.58
SVM decision value 1.91
SVM RNA-class probability 0.982119
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19382886 90 - 22407834
AUUGCCGGACUUUCUUAUCGGCGGGGGCUU--AAAGCGAAGCUUUCUUUAAUUAGAAAGUUUCGUUCUCCCUUUCUGGCUUAGGCAAAACAA
.(((((((.....))..((((..((((...--..(((((((((((((......)))))))))))))..))))..))))....)))))..... ( -31.30)
>DroSec_CAF1 16759 86 - 1
GUUGGCGGACUUUCUUAUCGGUUGGGACUU--GUAGCGAAGCUUUCUUUAAUUAGAAAGUUUCGUUCUCCCUUUCUGGCUUAGGCUAA----
.(((((((.....))..((((..((((...--(.(((((((((((((......))))))))))))))))))...)))).....)))))---- ( -26.70)
>DroSim_CAF1 17071 86 - 1
GUUGGCGGACUUUCUUAUCGGUUGGGACUU--GUAGCGAAGCUUUCUUUAAUUAGAAAGUUUCGUUCUCCCUUUCUGACUUACGCUAA----
.(((((((.....)...((((..((((...--(.(((((((((((((......))))))))))))))))))...))))....))))))---- ( -29.30)
>DroEre_CAF1 16907 85 - 1
GUUGAUGGGCUUUCUUAUCGGA-GGGGCCU--AUGGCGAAGCUUUCUAUAAGUAGAAAGUUCCAUUCUCCUUUUCUGCCUUAGUCAAA----
.(((((((((.........(((-((((((.--..)))(.(((((((((....))))))))).).))))))......))))..))))).---- ( -25.76)
>DroYak_CAF1 17280 82 - 1
CUUGGCGGACUUUCUUAU---A-GGGGCUU--UUGGUGAAGCUUUCUUUUAGUAGAAAGUUUCGUUCUCCCUUUCUGGCUUAGGCAUA----
((.(.((((.........---(-(((((..--...))((((((((((......)))))))))).....)))).)))).)..)).....---- ( -19.90)
>DroAna_CAF1 23519 81 - 1
UUUCGGGGACUUUCUUAUCGCU-GGGAUUUUCAGAGCGAAGCUUUCUUUUAUUAGAAAGUUU-ACUCUCCGCAUUUGACUUA-----A----
...((((((........(((((-..(.....)..)))))((((((((......)))))))).-..))))))...........-----.---- ( -21.50)
>consensus
GUUGGCGGACUUUCUUAUCGGU_GGGACUU__AUAGCGAAGCUUUCUUUAAUUAGAAAGUUUCGUUCUCCCUUUCUGGCUUAGGCAAA____
.................((((..((((.......(((((((((((((......))))))))))))).))))...)))).............. (-14.94 = -15.63 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:24 2006