Locus 6976

Sequence ID 2L_DroMel_CAF1
Location 19,380,729 – 19,380,849
Length 120
Max. P 0.500000
window11129

overview

Window 9

Location 19,380,729 – 19,380,849
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.17
Mean single sequence MFE -46.43
Consensus MFE -25.02
Energy contribution -25.12
Covariance contribution 0.09
Combinations/Pair 1.61
Mean z-score -1.42
Structure conservation index 0.54
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19380729 120 - 22407834
UCGGCAGCACCGCCGCUCACCAGGUGGGCAGCAAUGUGGAGUUUGCUGAUAACGCCAAUGCCGGCAACAAGGUUGACUUUGGUGGCGUAAACGCCGUGGACUCCAGUGCUCAGCUGCUCA
..((((((.(((((........)))))(.((((...(((((((..(.....(((((......)))..(((((....)))))))((((....)))))..))))))).))))).)))))).. ( -53.80)
>DroPse_CAF1 20207 120 - 1
UUGGAGCCUCGUCCGCCCACAACGUGGGCAGCAAUGUGGAGUUUGCCGACAACUCGAAUGCCGGCGCUGAGGUCAACUUUGGCGGCGCGAACACUUUGAACUCCGAGUCCCAGCUUGUCA
((((.(.(((....((((((...))))))........(((((((..(((....)))..(((.(.(((..(((....)))..))).))))........)))))))))).)))))....... ( -42.50)
>DroEre_CAF1 14486 120 - 1
UCGGCAGCACCGCCGCCCACCAGGUGGGCAGCAAUGUGGAGUUCGCUGAGAACGCCAAUGCCGGCAACAAGGUCAACUUUGGUGGAGUGAACGCCGUGGACACCAGUGCUCAGCUGCUCA
..((((((.(((((((((((...)))))).(((...(((.((((.....)))).))).))).)))..(((((....)))))..))..(((.(((..(((...)))))).))))))))).. ( -48.10)
>DroWil_CAF1 24707 120 - 1
UCGGUGCUUCUUCCGCCCACAAUGCUGGCAGCAAUGUGGAGUUUGCUGACAACUCAAAUGCUGGCACAGAAGUCAACUUUGGAGGAUCGAAUGCCGUUAAUUCCGAAGCACUGUUGUCGG
.(((((((((.((((((((((.(((.....))).))))(((((.......))))).......)))...((((....)))))))(((.((.....)).....))))))))))))....... ( -37.50)
>DroMoj_CAF1 19669 117 - 1
UCAACGCGGCCACCGCUCACAGUGUCGGCAGCAACGUGGAGUUCGCGGAUGCCAACAAUGCCGGCACUGAGGUCAACUUCGGCGGUGUCGGAGCUACCAACUCCGAGUCG---CUGCUCU
.....((((((((((((...(((((((((((((.((((.....))))..)))......))))))))))((((....)))))))))))((((((.......))))))...)---))))... ( -54.20)
>DroPer_CAF1 18212 120 - 1
UUGGAGCCUCGUCCGCCCACAACGUGGGCAGCAAUGUGGAGUUUGCCGACAACUCGAAUGCCGGCGCUGAGGUCAACUUUGGCGGCGCGAACACUUUGAACUCCGAGUCCCAGCUUGUCA
((((.(.(((....((((((...))))))........(((((((..(((....)))..(((.(.(((..(((....)))..))).))))........)))))))))).)))))....... ( -42.50)
>consensus
UCGGCGCCUCCUCCGCCCACAACGUGGGCAGCAAUGUGGAGUUUGCUGACAACUCCAAUGCCGGCACUGAGGUCAACUUUGGCGGCGCGAACGCCGUGAACUCCGAGGCCCAGCUGCUCA
.((((......)))).........((((((((....((((((((((((.((.......)).))))(((((((....)))))))..............)))))))).......)))))))) (-25.02 = -25.12 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:24 2006