Locus 6974

Sequence ID 2L_DroMel_CAF1
Location 19,367,615 – 19,367,709
Length 94
Max. P 0.938360
window11123

overview

Window 3

Location 19,367,615 – 19,367,709
Length 94
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 77.50
Mean single sequence MFE -26.73
Consensus MFE -15.83
Energy contribution -16.39
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -2.31
Structure conservation index 0.59
SVM decision value 1.29
SVM RNA-class probability 0.938360
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19367615 94 - 22407834
UGACUUCGAUUUAAGUAAUAGAUCAUUAACCCACUUCGAGAGAAUUGGUGAAAAAUUCUAUUACAUCGAGAG--------------------------CUCGACUGGAAUGUGAAAGUAU
..((((((((((..((((((((........(((.(((....))).)))........)))))))).((((...--------------------------.))))...)))).)).)))).. ( -21.49)
>DroSec_CAF1 1053 120 - 1
UGAUUUCGACUUAAGUAAUAGAUCAUUAACCCACUUCGAAAGAAUUGGUGAAAAGUUCUAUUACAUCGAGAGCAGUGAAAAACUCUACUGGUAUGGAGCUUUACUUAAAUGUGAAAGUAU
...(((((..((((((.............((((.(((....))).))).).((((((((((.((....((((...(....).))))....))))))))))))))))))...))))).... ( -29.10)
>DroSim_CAF1 1050 120 - 1
UGACUUCGCCUUAAGUAAUAGAUUAUUAACCAACUUCGAGAGAAUUGGUAAAAAGUUCUAUUAUAUCGAAAGCAGUGAAAAACUCGACUGGUAUGGAGCUUUACUUAAAUGUGAAAGUAU
..(((((((.((((((............(((((.(((....))))))))..((((((((((.....(....)((((((.....)).))))..))))))))))))))))..))).)))).. ( -29.60)
>consensus
UGACUUCGACUUAAGUAAUAGAUCAUUAACCCACUUCGAGAGAAUUGGUGAAAAGUUCUAUUACAUCGAGAGCAGUGAAAAACUC_ACUGGUAUGGAGCUUUACUUAAAUGUGAAAGUAU
....(((((.....((((((((......(((...(((....)))..))).......)))))))).))))).............................(((((......)))))..... (-15.83 = -16.39 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:19 2006