Locus 6971

Sequence ID 2L_DroMel_CAF1
Location 19,362,901 – 19,362,994
Length 93
Max. P 0.640940
window11118

overview

Window 8

Location 19,362,901 – 19,362,994
Length 93
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 76.28
Mean single sequence MFE -29.01
Consensus MFE -18.98
Energy contribution -19.94
Covariance contribution 0.96
Combinations/Pair 1.13
Mean z-score -1.24
Structure conservation index 0.65
SVM decision value 0.22
SVM RNA-class probability 0.640940
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19362901 93 - 22407834
ACGUGAUUAGCGCGUUGAUUUGGCAACCGAUUGCCGAAUGGAGUGCAUCCGAGCCAGCAU-UUCCACA-------------GCCC----AUCCUCAACAG-----AGUUUGGCUUG
.........((((.((.(((((((((....))))))))).))))))...(((((((((..-.......-------------))..----...(((....)-----))..))))))) ( -28.70)
>DroSec_CAF1 26382 97 - 1
ACAUGAUUAGCGCGUUGAUUUGGCAACCGAUUGCCGAAUGGAGUGCAUCCAAGCCAGCAU-UUCCACA-------------GCCCAGCCAUCCUCAACUG-----AGUUUGGCUUG
...........(.(((((((((((((....)))))))))(((((((..........))))-)))..))-------------)).)(((((..(((....)-----))..))))).. ( -31.00)
>DroSim_CAF1 26745 97 - 1
ACAUGAUUAGCGCGUUGAUUUGGCAACCGAUUGCCGAAUGGAGUGCAUCCGAGCCAGCAU-UUCCACA-------------GCCCAGCCAUCCUCAACAG-----AGUUUGGCGUG
..........((((((((((((((((....)))))))))(((((((..........))))-)))..))-------------))...((((..(((....)-----))..))))))) ( -31.70)
>DroEre_CAF1 25602 96 - 1
ACAUGAUUAGCGCGUUGAUUUGGCAACCGAUUGCCGAAUGGAGUGCAUCCGAGCCAACAU-UUGCACACUCAGCC--------------GUCCUCAACAG-----AGCUUGGCUUG
.........((((.((.(((((((((....))))))))).))))))...((((((((...-..((.......)).--------------...(((....)-----)).)))))))) ( -29.30)
>DroYak_CAF1 30356 116 - 1
GCAUGAUUAGCGCGUUGAUUUGGCAACCGAUUGCCGAAUGGAGUGCAUCCGAGCCAACACACUCCACACUCAUCCUCAACAUCCCCAACAUCCUCAACAGAGGAGAGUUUGGCUUG
.........((((.((.(((((((((....))))))))).))))))...((((((((..........((((.(((((......................))))))))))))))))) ( -36.35)
>DroPer_CAF1 44975 77 - 1
AAAUGAUUAGCGCGUUGAU-UGCCAAGCGAUUG-------GAGC---UCCAAGCCAGAAU-UUGUG----------------------CUUCCUCAACAG-----CGUUUGACUUG
........(((((((((((-(((...))))..(-------((((---..((((......)-))).)----------------------)))).))))).)-----))))....... ( -17.00)
>consensus
ACAUGAUUAGCGCGUUGAUUUGGCAACCGAUUGCCGAAUGGAGUGCAUCCGAGCCAGCAU_UUCCACA_____________GCCC___CAUCCUCAACAG_____AGUUUGGCUUG
.........((((.((.(((((((((....))))))))).))))))...((((((((...................................................)))))))) (-18.98 = -19.94 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:14 2006