Locus 6969

Sequence ID 2L_DroMel_CAF1
Location 19,358,631 – 19,358,732
Length 101
Max. P 0.556337
window11115

overview

Window 5

Location 19,358,631 – 19,358,732
Length 101
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.35
Mean single sequence MFE -38.23
Consensus MFE -24.07
Energy contribution -24.18
Covariance contribution 0.12
Combinations/Pair 1.26
Mean z-score -1.85
Structure conservation index 0.63
SVM decision value 0.05
SVM RNA-class probability 0.556337
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19358631 101 - 22407834
ACAAGAAAUUGUACGGUGAAAAUGAGC---CGGAAAAUGUGGGUGCUUUCGCUGCUGGCGCUGGCAGCGCUACAACUGCACUCGGGCAGCGAAGUGGCUGCACA
((((....)))).((((........))---)).....((..(.(((((.((((((((((((.....))))))...(((....)))))))))))))).)..)).. ( -38.40)
>DroSec_CAF1 21514 101 - 1
ACAAGAAAUUGUACAGUGAAAAUGAGC---CGGAAAAUGUGGGUGCUUUCGCUGUUGGCGCUGGCAGCGCUGCAACUGCGUUCGGGCAGCGAAGUGGCUGCACA
((((....))))...(((.......((---(.((..(((..(.(((...(((((((......)))))))..))).)..))))).)))(((......))).))). ( -34.90)
>DroSim_CAF1 21836 101 - 1
ACAAGAAAUUGUACAGUGAAAAUGAGC---CGGAAAAUGUGGGUGCUUUCGCUGUUGGCGCUGGCAGCGCUGCAACUGCAUUCGGGCAGCGAAGUGGCUGCACA
((((....))))...(((.......((---(.((..(((..(.(((...(((((((......)))))))..))).)..))))).)))(((......))).))). ( -35.30)
>DroEre_CAF1 19108 101 - 1
ACAAGUAAUUGUACAGUGAAAAUGAGC---CGGAAAAUAUGGGCGCUUUCGCUGCUGGCGCUGGCAGCGCUGCAACUGCGCGCGGGCAGUGAAGUAGCGGCACA
((((....))))...(((.......((---(.(......).)))....((((((((..(((((.(.((((.((....)))))).).))))).))))))))))). ( -40.50)
>DroYak_CAF1 24742 104 - 1
ACAAGAAAUUGUACAGUGAAAAUGAGUGGGUGGAAAAUAUGGGUGCUUUCGCUGCUGGCGCUGACAGCGCUGCAUCUGCGCUCGGGCAGUGAAGUGGCGGCACA
((((....))))..............................((((...(((..((..(((((.((((((.......))))).)..))))).))..))))))). ( -33.60)
>DroAna_CAF1 20095 101 - 1
AAAACAUCCUCCCCACCAGAUAUGGGC---CGGAAAGUGCUGUUGCUCUCGCUGCUGACGCUGGCGGCGCUGCUGCUGAGGUCAGGCAGCGGCGUCGAGGGGCA
..........((((.((((...(.(((---.((..((.((....)).))..))))).)..))))(((((((((((((.......))))))))))))).)))).. ( -46.70)
>consensus
ACAAGAAAUUGUACAGUGAAAAUGAGC___CGGAAAAUGUGGGUGCUUUCGCUGCUGGCGCUGGCAGCGCUGCAACUGCGCUCGGGCAGCGAAGUGGCGGCACA
((((....)))).........................((((...(((((((((((.(((((.....)))))....(((....)))))))))))..)))..)))) (-24.07 = -24.18 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:12 2006