Locus 6968

Sequence ID	2L_DroMel_CAF1
Location	19,353,941 – 19,354,034
Length	93
Max. P	0.747852

overview

Window 4

Location	19,353,941 – 19,354,034
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	79.35
Mean single sequence MFE	-21.00
Consensus MFE	-15.24
Energy contribution	-15.84
Covariance contribution	0.60
Combinations/Pair	1.13
Mean z-score	-1.63
Structure conservation index	0.73
SVM decision value	0.47
SVM RNA-class probability	0.747852
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19353941 93 + 22407834
GCCACGCCCCAUUUCGCAGCGCACACAUGUCACAGUGACGUGGUAUUAAACUGGCUGGCUGCAAAAAAAUGUACACACAAAAAAAUAAAGUUU
((((.(((.......((...))((.((((((.....))))))))........)))))))((((......)))).................... ( -19.40)
>DroSec_CAF1 17013 90 + 1
GCCACGCCCCAUUUCGCAGCGCCCACAUGUCACAGUGACAUGGAAUUAAACUCGCUGGCUGCGAA-AAAUGUACACUCAAAAA--AAAAGCUU
.....((....(((((((((((...((((((.....))))))((.......))))..))))))))-)..((......))....--....)).. ( -22.00)
>DroSim_CAF1 17238 92 + 1
GCCACGCCCCAUUUCGCAGCGCCCACAUGUCACAGUGACAUGGAAUUAAACUGGCUGGCUGCGAA-AAAUGUACACUCAAAAAAAAAAAGCUU
.....((....((((((((((((..((((((.....))))))..........)))..))))))))-)..((......))..........)).. ( -23.70)
>DroYak_CAF1 19881 91 + 1
GCCACGCCCCACUUCGCAGCGCCCACAUGUCACAGUGACGUGGAAUUAAACUCGCUGGCUGCGAA-AAUUGUACACACAAAAA-AGACUGCUU
.....((.....((((((((((......))..((((((.((........))))))))))))))))-..((((....))))...-.....)).. ( -22.20)
>DroAna_CAF1 16136 71 + 1
GCCACGCCCCUUAACGCAGCGCCCACAUGUCACAGUGACAUGGAAAUAC-----CAGGCAGUGGA-A--------------GA--AAAAGUUA
.((((((........))...(((..((((((.....))))))(......-----).))).)))).-.--------------..--........ ( -17.70)
>consensus
GCCACGCCCCAUUUCGCAGCGCCCACAUGUCACAGUGACAUGGAAUUAAACUCGCUGGCUGCGAA_AAAUGUACACACAAAAA_AAAAAGCUU
............((((((((.....((((((.....))))))........(.....)))))))))............................ (-15.24 = -15.84 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:11 2006