Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,338,458 – 19,338,558 |
Length | 100 |
Max. P | 0.560854 |
Location | 19,338,458 – 19,338,558 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 81.25 |
Mean single sequence MFE | -35.92 |
Consensus MFE | -24.80 |
Energy contribution | -25.48 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.05 |
Mean z-score | -1.58 |
Structure conservation index | 0.69 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560854 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19338458 100 - 22407834 GGCAUGGGCAUGGGCAUGGGCAUGGGCAUGGGCCUGGGCCCAAGUGACGACUCUUGGCCGGGACACAUCUUUCUGGCCUCGGUGAAAAGGGUCAAUGGAA .((.(((((..((((....((....))....))))..))))).))...(((((((((((((((.......))))))))........)))))))....... ( -39.30) >DroSec_CAF1 13829 82 - 1 GG------------------CCAGGGCCUGGGCCUGGGCCCAAGUGACGACUCUUGGCCGGGACACUUAUUUCUGGCCUCGGUGAAAAGGGUCAAUGGAA ((------------------((.((((....)))).))))........(((((((((((((((.......))))))))........)))))))....... ( -34.40) >DroSim_CAF1 14099 76 - 1 GG------------------------CCUGGGCCUGGGCCCAAGUGACGACUCUUGGCCGGGACACAUCUUUCUGGCCUCGGUGAAAAGGGUCAAUGGAA .(------------------------(.(((((....))))).))...(((((((((((((((.......))))))))........)))))))....... ( -30.00) >DroEre_CAF1 11129 94 - 1 GGCCUGGGCAUGG------GCAUGGGCAUGGGCCUGGAACCAAGUGACGACUCUUGGCCGGGACACAUCUUUCUGGCCCCAGUGAAAAGGGUCAAUGGAA (((((...(((((------((..(((.(((..(((((..(((((........))))))))))...))))))....))))..)))....)))))....... ( -34.10) >DroYak_CAF1 16670 88 - 1 GGCCUGGGCCUG------------GGCCUGGGCCUGGGUCCAAGUGACGACUCUUGGCCGGGACACAUCUUUCUGGGCUGGGUGAAAAGGGUCAAUGGAA ((((((((((..------------(((....)))..))))).........(.((..(((.(((........))).)))..)).)....)))))....... ( -41.80) >consensus GGC_UGGGC_UG________C__GGGCCUGGGCCUGGGCCCAAGUGACGACUCUUGGCCGGGACACAUCUUUCUGGCCUCGGUGAAAAGGGUCAAUGGAA .........................((.(((((....))))).))...(((((((((((((((.......))))))))........)))))))....... (-24.80 = -25.48 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:10 2006