Locus 6966

Sequence ID 2L_DroMel_CAF1
Location 19,338,263 – 19,338,360
Length 97
Max. P 0.710848
window11112

overview

Window 2

Location 19,338,263 – 19,338,360
Length 97
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 88.44
Mean single sequence MFE -31.33
Consensus MFE -24.56
Energy contribution -26.40
Covariance contribution 1.84
Combinations/Pair 1.12
Mean z-score -2.64
Structure conservation index 0.78
SVM decision value 0.38
SVM RNA-class probability 0.710848
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19338263 97 + 22407834
GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUGUUGCCGAGC--UG-CUGCGGCUACGACAAAUUCCUCGGCAGCAUUUUAAAAAUAGCGCCC
((..........((.((((((((....)))))))).))((((((((((.--..-.((((....)).)).....))))))))))...........)).... ( -33.70)
>DroVir_CAF1 31156 86 + 1
GCAACUUCCUCUUGAAUGUGCAACAUGUUGCAUGC--------------UGUGUAUGUAGCUGCGACAAAUUCCUCGCUAGCGUUUUAAAAAUAGCGCCC
((...............((((((....))))))((--------------(((.((....(((((((........)))).)))....))...))))))).. ( -22.20)
>DroSec_CAF1 13633 97 + 1
GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUUUUGCCGAGC--UG-CUGCGGCUACGACAAAUUCCUCGGCAGGAUUUUAAAAAUAGCGCCC
((..........((.((((((((....)))))))).))((((((((((.--..-.((((....)).)).....))))))))))...........)).... ( -30.90)
>DroSim_CAF1 13904 97 + 1
GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUGUUGCCGAGC--UG-CUGCGGCUACGACAAAUUCCUCGGCAGCAUUUUAAAAAUAGCGCCC
((..........((.((((((((....)))))))).))((((((((((.--..-.((((....)).)).....))))))))))...........)).... ( -33.70)
>DroEre_CAF1 10951 97 + 1
GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUGUUGCCGAGU--UG-CUGCGGCUACGACAAAUUCCUCGGCAGCAUUUUAAAAAUAGCGCCC
((..........((.((((((((....)))))))).))((((((((((.--..-.((((....)).)).....))))))))))...........)).... ( -33.70)
>DroYak_CAF1 16491 97 + 1
GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUGUUGCCGAGU--UG-CGGCGGCUACGACAAAUUCCUCGGCAGCAUUUUAAAAAUAGCGCCC
((..........((.((((((((....)))))))).))(((((((((((--((-((.......)).)))....))))))))))...........)).... ( -33.80)
>consensus
GCAACUUCCUUUGCUAUGUGCAACAUGUUGCACGUUGCUGUUGCCGAGC__UG_CUGCGGCUACGACAAAUUCCUCGGCAGCAUUUUAAAAAUAGCGCCC
((..........((.((((((((....)))))))).))((((((((((.........((....))........))))))))))...........)).... (-24.56 = -26.40 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:09 2006