Locus 6965

Sequence ID 2L_DroMel_CAF1
Location 19,332,141 – 19,332,234
Length 93
Max. P 0.838008
window11111

overview

Window 1

Location 19,332,141 – 19,332,234
Length 93
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 76.67
Mean single sequence MFE -20.58
Consensus MFE -15.32
Energy contribution -15.27
Covariance contribution -0.05
Combinations/Pair 1.27
Mean z-score -1.23
Structure conservation index 0.74
SVM decision value 0.74
SVM RNA-class probability 0.838008
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19332141 93 - 22407834
-UCAAAUUUAUGUGCCUCGCUUCCGCUAAUGGAAUUUUAAUGUUUCAUUGGAAGUAG---------ACGCAUAAAUU-GAGUUUUGGUCA-AAAC----CCAAUAACGG
-((((.((((((((.((.(((((((...(((((((......))))))))))))))))---------.))))))))))-))(((((((...-....----)))).))).. ( -27.70)
>DroVir_CAF1 24484 99 - 1
-ACAAAGUUAUGUACAACGCAUCCGCUAAUGGAAUUUUAAUGUUUCAUUCGAAAUAGUCGCAUUCGGCGCAUAAAUUUGGCU-UUGCUCA-AAU------CAAUAUUU-
-.((((((((........((...((..((((((((......)))))))))).....((((....)))))).......)))))-)))....-...------........- ( -16.56)
>DroPse_CAF1 5841 98 - 1
-ACAAAUUUAUGUGCACCGCUUCCGCUAAUGGAAUUUUAAUGUUUCAUUUGAAAUAG---------ACGCAUAAAUUUUGCUUUUGGUCA-GAAAAAAACGAGAAUCGG
-..((((((((((((.....(((((....)))))......((((((....)))))))---------.)))))))))))...(((((....-........)))))..... ( -16.70)
>DroMoj_CAF1 14295 101 - 1
CUGAAGUUUAUGUACAACGCAUCCGCUAAUGGAAUUUUAAUGUUUCAUUUGAAAUAGUCGCGUACGAUGCAUAAAUUUCGCU-UAGCUCA-AAU------CAAUAUUUG
..((((((((((((..((((.((((....)))).......((((((....))))))...))))....))))))))))))...-.......-...------......... ( -23.40)
>DroAna_CAF1 7778 95 - 1
-UGAAAUUUAUGUGGCUCGCUUCCGCUAAUGGAAUUUUAAUGUUUCAUCCGAAACAG---------ACGCAUAAAUUUUGCUCUUGGCCAGAAAA----CCAAUAUCGG
-.((((((((((((......(((((....)))))......((((((....)))))).---------.))))))))))))....((((........----))))...... ( -21.70)
>DroPer_CAF1 8507 97 - 1
-ACAAAUUUAUGUGCACCGCUUCCGCUAAUGGAAUUUUAAUGUUUCAUUUGAAAUAG---------ACGCAUAAAUUUUGCUUUUGGUCA-GAAA-AAACGAGAAUCGG
-..((((((((((((.....(((((....)))))......((((((....)))))))---------.)))))))))))((.((((.((..-....-..)).)))).)). ( -17.40)
>consensus
_ACAAAUUUAUGUGCAACGCUUCCGCUAAUGGAAUUUUAAUGUUUCAUUUGAAAUAG_________ACGCAUAAAUUUUGCUUUUGGUCA_AAAA____CCAAUAUCGG
..((((((((((((.......((((....)))).......((((((....))))))...........)))))))))))).............................. (-15.32 = -15.27 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:08 2006