Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,331,715 – 19,331,816 |
Length | 101 |
Max. P | 0.985406 |
Location | 19,331,715 – 19,331,816 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 84.54 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -20.60 |
Energy contribution | -22.28 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.10 |
Mean z-score | -2.70 |
Structure conservation index | 0.77 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19331715 101 + 22407834 AAGCUGUGUUUUCCCAGUGCGGAUUACCAAAGGAAUUUGGAGAGUUCGUGCUAUAAAAUACUUUGCGAA----------AGUAACACUAUUGCUAAGCAAAUAGUAUUAAG .....(((((((...((..((((((.(((((....)))))..))))))..))..))))))).((((...----------.)))).((((((((...)).))))))...... ( -27.60) >DroSec_CAF1 7137 95 + 1 AAGCUGUGUUUUCCCAGUGCGGAUUACCAAAGGAAUUUGGACAGUUCGUGCUAGAAAAUACUUUGCGAA----------AGUAACACUAUUGCUAAGCAAAUAGU------ .....((((((((..((..((((((.(((((....)))))..))))))..)).)))))))).((((...----------.)))).((((((((...)).))))))------ ( -29.90) >DroSim_CAF1 7359 101 + 1 AAGCUGUGUUUUCCCAGUGCGGAUUACCAAAGGAAUUUGGAAAGUUCGUGCUAGAAAAUACUUUGCGAA----------AGUAACACUAUUGCUAAGCAAAUAGUAUUAAG .....((((((((..((..((((((.(((((....)))))..))))))..)).)))))))).((((...----------.)))).((((((((...)).))))))...... ( -30.40) >DroEre_CAF1 4422 111 + 1 AAGCUGUGUUUUCCCAGUGCGGAUUACCAAAGGAAUUUGAAAACUUCGCUCUAGAAAAUACUUUGCGAAAAGUAGCAAGAGUAAAACUAUUGCAAAGCAAAUUGUAUUAAG ..(((((((((((..((.(((((((..((((....))))..)).))))).)).))))))))..(((.....)))((((.((.....)).))))..)))............. ( -23.70) >DroYak_CAF1 9929 109 + 1 AAGCUGUGU--UCCCAGUGCGGACUACCAAAGGAAUUUCAAUACUUUGCACUAGAAAAUACUUUGCGAAAAGAAGCAAAAGUAACACUAUUGCAAAGAAAAUUGUAUUAGG .........--.((.(((((((....))...............(((((((.(((....((((((((........)).))))))...))).)))))))......))))).)) ( -22.80) >consensus AAGCUGUGUUUUCCCAGUGCGGAUUACCAAAGGAAUUUGGAAAGUUCGUGCUAGAAAAUACUUUGCGAA__________AGUAACACUAUUGCUAAGCAAAUAGUAUUAAG ..((.((((((((..(((((((((..(((((....)))))...))))))))).))))))))...))...................((((((........))))))...... (-20.60 = -22.28 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:07 2006