Locus 6963

Sequence ID 2L_DroMel_CAF1
Location 19,331,058 – 19,331,163
Length 105
Max. P 0.704277
window11109

overview

Window 9

Location 19,331,058 – 19,331,163
Length 105
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 72.48
Mean single sequence MFE -25.78
Consensus MFE -14.32
Energy contribution -14.32
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.56
SVM decision value 0.36
SVM RNA-class probability 0.704277
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19331058 105 - 22407834
-------AAGGAAUGAGAU-AGAAUACUUGUACUCUGAUUAUACAUUUAUUUUAGUAUGUCUCUAUAAACUUUCUCGCAGUGUGCUCUGCUGGAAAAUCAGCAAAGGUACACA
-------.......(((((-((((((..((((.........))))..))))).....))))))................(((((((.(((((......)))))..))))))). ( -23.70)
>DroSec_CAF1 6489 103 - 1
-------AAGGAAUGAGAU-AU-ACACUUGUUUUAUUAUUAAGAAUGUAACUUAGUAGGGCUCUA-AAACUUUCUCACGGUGUGCGCUGCUGGAAAAUCAGCAAAGGUACACA
-------......(((((.-..-......(((((((((..............)))))))))....-......)))))..((((((..(((((......)))))...)))))). ( -23.45)
>DroSim_CAF1 6711 103 - 1
-------AAGGAAUAAGAU-AU-ACACUUGUUUUAUUAUUAAGAAUGUAAAUUAGUAGAGCUGUA-AAACUUUCUCGCAGUGUGCGCUGCUGGAAAAUCAGCAAAGGUACACA
-------...((..(((..-.(-(((...(((((((((..............)))))))))))))-...)))..))...((((((..(((((......)))))...)))))). ( -22.74)
>DroEre_CAF1 3779 100 - 1
ACUUCACAAGGGA---GAUGGA-AUAGUUGUGCAGUGAUGGUGAG-------UACUGUGACCAU--GAGCUUUCUCCCAGUGUGCGCUGCUGGAAAAUCAGCAAAGGUACACA
.........((((---((.((.-((.(((..((((((........-------))))))))).))--...)).)))))).((((((..(((((......)))))...)))))). ( -33.30)
>DroYak_CAF1 9262 109 - 1
ACUUUAUCAGGGAUGAGAU-AA-AUAAUUGUGCUAUUAUACUUUAUACAAUUUACUGUGGAUCU--GAGCUUUCUCCCUGUGUGCGCUGCUGGAAAAUCAGCAAAGGUACACA
........(((((.((((.-..-(((((......))))).(((..((((......)))).....--))).)))))))))((((((..(((((......)))))...)))))). ( -25.70)
>consensus
_______AAGGAAUGAGAU_AA_AUACUUGUGCUAUUAUUAUGAAUGUAAUUUAGUAUGGCUCUA_AAACUUUCUCCCAGUGUGCGCUGCUGGAAAAUCAGCAAAGGUACACA
...............................................................................((((((..(((((......)))))...)))))). (-14.32 = -14.32 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:06 2006