Locus 6961

Sequence ID 2L_DroMel_CAF1
Location 19,327,166 – 19,327,266
Length 100
Max. P 0.863067
window11107

overview

Window 7

Location 19,327,166 – 19,327,266
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 89.22
Mean single sequence MFE -25.67
Consensus MFE -22.09
Energy contribution -22.39
Covariance contribution 0.31
Combinations/Pair 1.07
Mean z-score -1.99
Structure conservation index 0.86
SVM decision value 0.84
SVM RNA-class probability 0.863067
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19327166 100 - 22407834
CCUUAUGCUAAUGCCCAUGUUCAUGCUGUUCAUGUUGCAGGUGCAACGCGUUGGCAUUUGCAUGCAAAUUAGUUGACAACGUUCAACACUUGGCUUCGAU
((.(((((.((((((.((((..(((.....)))(((((....))))))))).)))))).))))).......(((((......)))))....))....... ( -26.70)
>DroPse_CAF1 4 84 - 1
CCUUAUGCAAAUGCUCAUGUU---------CAUGUUGCAGGUGCAACGCGCUGGCAUUUGCAUGCAAAUUAGUUGACAACUCUCAACACUAGG-------
(((((((((((((((..(((.---------...(((((....))))))))..)))))))))))).......(((((......)))))...)))------- ( -27.70)
>DroEre_CAF1 116 91 - 1
UCAUAUGCUAAUGCCCAUGUU---------CAUGUUGCAGGUGCAACGCGUUGGCAUUUGCAUGCAAAUUAGUUGACAACGCUCAACACUUGGCUUCGAU
...(((((.((((((.((((.---------...(((((....))))))))).)))))).))))).......(((((......)))))............. ( -26.80)
>DroYak_CAF1 5375 91 - 1
CCUUAUGCUAAUGCCCAUGUU---------CAUGUUGCAGGUGCAACGCGUUGGCAUUUGCAUGCAAAUUAGUUGACAACGCUCAACACUUGGCUUCGAU
((.(((((.((((((.((((.---------...(((((....))))))))).)))))).))))).......(((((......)))))....))....... ( -27.00)
>DroAna_CAF1 2570 91 - 1
CCUUAUGCUAAUGCCCAUGUU---------CAUGUUGCAGGUGCAACGCGUUGGCAUUUGCAUGCAAAUUACUUGACAACACUCAACACUUGGCUGCGAU
....((((((((((..((...---------.))(((((....)))))))))))))))(((((.((.......((((......))))......))))))). ( -24.32)
>DroPer_CAF1 2615 91 - 1
CCUUAUGCAAAUUCUCAUGUU---------CAUGUUGCAGGUGCAACGCGCUGGCAUUUGCAUGCAAAUUAGUUGACAACUCUCAACACUAGGCUUCGAU
((((((((((((.((..(((.---------...(((((....))))))))..)).))))))))).......(((((......)))))...)))....... ( -21.50)
>consensus
CCUUAUGCUAAUGCCCAUGUU_________CAUGUUGCAGGUGCAACGCGUUGGCAUUUGCAUGCAAAUUAGUUGACAACGCUCAACACUUGGCUUCGAU
((.(((((.((((((.((((.............(((((....))))))))).)))))).))))).......(((((......)))))....))....... (-22.09 = -22.39 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:04 2006