Locus 696

Sequence ID 2L_DroMel_CAF1
Location 2,013,717 – 2,013,810
Length 93
Max. P 0.524083
window1142

overview

Window 2

Location 2,013,717 – 2,013,810
Length 93
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 95.36
Mean single sequence MFE -23.96
Consensus MFE -21.78
Energy contribution -22.45
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.01
Structure conservation index 0.91
SVM decision value -0.02
SVM RNA-class probability 0.524083
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2013717 93 - 22407834
UGGCACUUGUGUCACUUUUAACUGCUUGCGAGCAUCCGCAGGCUCUCGGUUGGGGUAUAAAA-CCUUUUAAUUUGCUCAGCCGCAUACUCCACA
(((((....))))).........(((((((......)))))))...((((((((........-............))))))))........... ( -24.55)
>DroSec_CAF1 31262 93 - 1
UGGCACUUGUGUCACUUUUAACUGCUUGCGAGUCUCCGCAGGCUCUCGGUUGGGGUAUAAAA-CCUUUUAAUUUGCUCAGCCGCAUACUCCACA
(((((....))))).........(((((((......)))))))...((((((((........-............))))))))........... ( -24.55)
>DroSim_CAF1 29602 93 - 1
UGGCACUUGUGUCACUUUUAACUGCUUGCGAGUCUCCGCAGGCUCUCGGUUGGGGUAUAAAA-CCUUUUAAUUUGCUCAGCCGCAUACUCCACA
(((((....))))).........(((((((......)))))))...((((((((........-............))))))))........... ( -24.55)
>DroEre_CAF1 28435 93 - 1
UGGCACUUGUGUCACUUUUAACUGCUUGCGAGUCUCCGCAGGCUCUCGGUUGGGGUAUAAAA-CCUUUUAAUUUGCUCAGCCGCAUACUCCACA
(((((....))))).........(((((((......)))))))...((((((((........-............))))))))........... ( -24.55)
>DroYak_CAF1 32802 93 - 1
UGGCACUUGUGUCACUUUUAACUGCUUGCGAGUCUCCGCAGGCUCUCGGUUGGGGUAUAAAA-CCUUUUAAUUUGCUCAGCCGCACACUCCACA
(((....(((((...........(((((((......)))))))....(((((((........-............))))))))))))..))).. ( -25.45)
>DroAna_CAF1 28679 94 - 1
CACCACUUGUGUCAUUUUUAACUGCUUGCGAGUCUCCGCAGGCUCUCAGUUGGGGGAUAAAAGCCUUUUAAUUUGCUCAGCCGCGUACUCCAAG
(((.....))).............((((.((((...(((.((((..((((((((((........))))))).)))...))))))).)))))))) ( -20.10)
>consensus
UGGCACUUGUGUCACUUUUAACUGCUUGCGAGUCUCCGCAGGCUCUCGGUUGGGGUAUAAAA_CCUUUUAAUUUGCUCAGCCGCAUACUCCACA
(((((....))))).........(((((((......)))))))...((((((((.....................))))))))........... (-21.78 = -22.45 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:11 2006