Locus 6959

Sequence ID 2L_DroMel_CAF1
Location 19,323,630 – 19,323,745
Length 115
Max. P 0.613881
window11102

overview

Window 2

Location 19,323,630 – 19,323,745
Length 115
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.17
Mean single sequence MFE -45.60
Consensus MFE -39.89
Energy contribution -39.95
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -1.73
Structure conservation index 0.87
SVM decision value 0.16
SVM RNA-class probability 0.613881
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19323630 115 + 22407834
AGAGCUGCCCAGCAAUUUGUCCGAUCUCCCGACGGCCUGCUGUGACUUCUGCCAAAGUUGUGUGUUUGGGUCUUUUGUGUUUUUAGCAGGCGGUGUGGGGGGUCG-----GGAACCGGCU
..........(((......((((((((((((((.((((((((.(((((..((((......)).))..)))))...........)))))))).)).))))))))))-----)).....))) ( -45.90)
>DroSec_CAF1 16138 115 + 1
AGAACUGCCCAGCAAUUUGUCUGAUCUCCCGACGGCCUGCUGUGACUUCUGCCAAAGUUGUGUGUUUGGGUCUUUUGUGUUUUUAGCAGGCGGUGUGGGGGGUCG-----GGAACCGGCU
..........(((......((((((((((((((.((((((((.(((((..((((......)).))..)))))...........)))))))).)).))))))))))-----)).....))) ( -43.70)
>DroSim_CAF1 17968 115 + 1
AGAACUGCCCAGCAAUUUGUCCCAUCUCCCGACGGCCUGCUGUGACUUCUGCCAAAGUUGUGUGUUUGGGUCUUUUGUGUUUUUAGCAGGCGGUGUGGGGGGUCG-----GGAACCGGCU
..........(((......((((((((((((((.((((((((.(((((..((((......)).))..)))))...........)))))))).)).)))))))).)-----)))....))) ( -43.20)
>DroEre_CAF1 15157 119 + 1
AGAACUGCCCAGCAAUUUGUCCGAUCUCCCGACGGCCUGCUGUGACUUCUGCCAAAGUUGUGUGUUUGGGUCUUUUGUGUU-UUAGCAGGCGGUGUGGGGGGUCGGCUGGGGAACCGGCU
.(((.(((...))).)))...((((((((((((.((((((((.(((((..((((......)).))..))))).........-.)))))))).)).))))))))))(((((....))))). ( -49.60)
>consensus
AGAACUGCCCAGCAAUUUGUCCGAUCUCCCGACGGCCUGCUGUGACUUCUGCCAAAGUUGUGUGUUUGGGUCUUUUGUGUUUUUAGCAGGCGGUGUGGGGGGUCG_____GGAACCGGCU
......(((............((((((((((((.((((((((.(((((..((((......)).))..)))))...........)))))))).)).))))))))))...........))). (-39.89 = -39.95 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:00 2006