| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,322,959 – 19,323,079 |
| Length | 120 |
| Max. P | 0.905623 |
| Location | 19,322,959 – 19,323,079 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.19 |
| Mean single sequence MFE | -42.10 |
| Consensus MFE | -38.19 |
| Energy contribution | -38.88 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19322959 120 + 22407834 CCUGUCAGCCCGACCGACGAAAGUGUCACGCUGUCUUUAUGAAAGGUCACGACUGGGAAAUGGAAAAUUGGUUUGUUUUCCACCCAGGUAUAAACGUAGUCGGGCGAGGACACCUCAGCC ..((((.(((((((..(((...(((..((.((.((.....)).)))))))..(((((...((((((((......))))))))))))).......))).)))))))...))))........ ( -42.50) >DroSec_CAF1 15453 120 + 1 CCUGUCAGCCCGACCGACGAAAGUGUCACGCUGCCUUUAUGAAAGGUCACGACUGGGAAAUGGAAAAUUGGUUUGAUUUCCACCCAGGUAUAAACGAAGUCGGGCGAGGACACCUCAGCC ..((((.(((((((..((....)).((.((..(((((.....)))))..)).(((((...((((((..........)))))))))))........)).)))))))...))))........ ( -40.60) >DroSim_CAF1 17281 120 + 1 CCUGUCAGCCCGACCGACGAAAGUGUCACGCUGCCUUUAUGAAAGGUCACGACUGGGAAAUGGGAAAUUGGUUUGAUUUCCACCCAGGUAUAAACGAAGUCGGGCGAGGACACCUCAACC ..((((.(((((((..((....)).((.((..(((((.....)))))..)).(((((.....(((((((.....))))))).)))))........)).)))))))...))))........ ( -43.00) >DroEre_CAF1 14476 118 + 1 GCUGUCAGCCCGCACGACGAAAGUGUCACGCUGCCU-UAUGAGAGGUCACGACUGGGAAAUGGAAAAUUGGCUGGUUUUCCACUCAGGUAUGAGCGAAGUCGGGCGAGGACACCU-AGCC ..((((.(((((.((((((....)))).((((((((-(....))))).....(((((...(((((((((....)))))))))))))).....))))..)))))))...))))...-.... ( -42.30) >consensus CCUGUCAGCCCGACCGACGAAAGUGUCACGCUGCCUUUAUGAAAGGUCACGACUGGGAAAUGGAAAAUUGGUUUGAUUUCCACCCAGGUAUAAACGAAGUCGGGCGAGGACACCUCAGCC ..((((.(((((((((((....))....((..(((((.....)))))..)).(((((...((((((((......))))))))))))).......))..)))))))...))))........ (-38.19 = -38.88 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:56 2006