Locus 6955

Sequence ID 2L_DroMel_CAF1
Location 19,320,886 – 19,321,006
Length 120
Max. P 0.991127
window11092

overview

Window 2

Location 19,320,886 – 19,321,006
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.97
Mean single sequence MFE -26.60
Consensus MFE -24.06
Energy contribution -24.10
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.82
Structure conservation index 0.90
SVM decision value 2.25
SVM RNA-class probability 0.991127
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19320886 120 - 22407834
AUAUGGAAGUGGUCCAACUACCUGGUAUCCAUUCCCUUUUCUCAGUAUAUCUCCCUCGGCUAUCUCGUGACCCUUACACGAUCAGUCUGCGCAGAUAAGGAUUAUAAAUCAUUUCUACAA
...(((((((((((((......))).........((((.(((..(((..........((((...(((((.......)))))..)))))))..))).)))).......))))))))))... ( -23.70)
>DroSec_CAF1 13389 119 - 1
AUAUGGAAGUGGUCCAACUACCUGGU-UCCAUUCCCUUUUCUCAGUAUAUCUCCCUCGGCUAUCUCGUGACCCUUACACGAUCAGCCUGCGCAGAUAAGGAUUAUAAAUCAUUUCUACAA
...(((((((((((((......))).-.......((((.(((..(((..........((((...(((((.......)))))..)))))))..))).)))).......))))))))))... ( -26.40)
>DroSim_CAF1 15238 119 - 1
AUAUGGAAGUGGUCCAACUACCUGGU-UCCAUUCCCUUUUCUCAGUAUAUCUCCCUCGGCUAUCUCGUGACCCCUACACGAUCAGCCUGCGCAGAUAAGGAUUAUAAAUCAUUUCUACAA
...(((((((((((((......))).-.......((((.(((..(((..........((((...(((((.......)))))..)))))))..))).)))).......))))))))))... ( -26.40)
>DroEre_CAF1 12452 117 - 1
AUAUGGAAGUGGUCCAACUACCUGGU-UCCAUUCCCUU-UCCC-GUACAUCUCCCUGGGCUAUCUCGUGACCCUUACACGAUCAGCCUGCACAGAUAAGGAUUAUAAAUCAUUUCUACCA
...(((((((((((((......))).-...........-..((-....((((...((((((...(((((.......)))))..))))))...))))..)).......))))))))))... ( -25.70)
>DroYak_CAF1 13681 118 - 1
AUAUGGAAGUGGUUCAACUACCUGGU-UCCAUUCCCUUUUCCC-GGGUAUCUCCCUGGGCUAUCUCGUGACCCUUACACGAUCAGCCUGCACAGAUAAGGAUUAUAAAUCAUUUCUACAA
...(((((((((((.((((....)))-)......((((.((..-(((.....))).(((((...(((((.......)))))..))))).....)).))))......)))))))))))... ( -30.80)
>consensus
AUAUGGAAGUGGUCCAACUACCUGGU_UCCAUUCCCUUUUCUCAGUAUAUCUCCCUCGGCUAUCUCGUGACCCUUACACGAUCAGCCUGCGCAGAUAAGGAUUAUAAAUCAUUUCUACAA
...((((((((((.......(((((........))............(((((.....((((...(((((.......)))))..)))).....)))))))).......))))))))))... (-24.06 = -24.10 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:51 2006