Locus 6954

Sequence ID 2L_DroMel_CAF1
Location 19,320,728 – 19,320,846
Length 118
Max. P 0.999786
window11091

overview

Window 1

Location 19,320,728 – 19,320,846
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.88
Mean single sequence MFE -26.16
Consensus MFE -23.86
Energy contribution -24.38
Covariance contribution 0.52
Combinations/Pair 1.06
Mean z-score -2.57
Structure conservation index 0.91
SVM decision value 4.08
SVM RNA-class probability 0.999786
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19320728 118 - 22407834
GACAAUAAAUCAAAGCAGCAGGGAAAAAACUGUCAGUUGGCGCCAGUCACCAGCGUAAAGACAGUUUUCCUAAAGAUUCUCACAUUUAACCA--AAAUCGUUUAAAUGAUUAAUGUCAAC
((((.(((............((((((..((((((.(((((.(.....).))))).....))))))))))))...........(((((((.(.--.....).))))))).))).))))... ( -26.90)
>DroSec_CAF1 13235 118 - 1
GACAAUAAAUCAAAGCAGCAGGGAAAAAACUGUCAGUUGGCGCCAGUCACCAGCGUAAAGACAGUUUUCCUAAAGAUUCUCACAUUUAACCA--AAACCGUUUAAAUGAUUAAUGUCAAC
((((.(((............((((((..((((((.(((((.(.....).))))).....))))))))))))...........(((((((.(.--.....).))))))).))).))))... ( -26.90)
>DroSim_CAF1 15084 118 - 1
GACAAUAAAUCAAAGCAGCAGGGAAAAAACUGUCAGUUGGCGCCAGUCACCAGCGUAAAGACAGUUUUCCUAAAGAUUCUCACAUUUAACCA--AAACCGUUUAAAUGAUUAAUGUCAAC
((((.(((............((((((..((((((.(((((.(.....).))))).....))))))))))))...........(((((((.(.--.....).))))))).))).))))... ( -26.90)
>DroEre_CAF1 12307 117 - 1
GACGAUAAAUCAAAGACGCAGUGAAAAAACUGUCAGUUGGCGCCAGUCACCAGCGUA--GACAGUUUUCCUAAAGACUCUCACAUUAAACCGA-AAACCGUUUAAAUGAUUAAUGUCAAC
((((...(((((........((((.(((((((((.(((((.(.....).)))))...--))))))))).(....)....)))).((((((...-.....)))))).)))))..))))... ( -26.30)
>DroYak_CAF1 13537 120 - 1
GACAAUAAAUCAAAGACGCAGAGAAAAAACUGUCAGUUGGCGCCAGUCACCACCGUAAAGACAGUUUUCCUAAAGAUUCUCACAUUUAACCAAAAAACCGUUUAAAUGAUUAAUGUCAAC
((((.(((............((((((((((((((....(((....)))((....))...)))))))))........))))).(((((((.(........).))))))).))).))))... ( -23.80)
>consensus
GACAAUAAAUCAAAGCAGCAGGGAAAAAACUGUCAGUUGGCGCCAGUCACCAGCGUAAAGACAGUUUUCCUAAAGAUUCUCACAUUUAACCA__AAACCGUUUAAAUGAUUAAUGUCAAC
((((.(((............((((((((((((((.(((((.(.....).))))).....)))))))))........))))).(((((((.(........).))))))).))).))))... (-23.86 = -24.38 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:50 2006