Locus 6953

Sequence ID 2L_DroMel_CAF1
Location 19,319,885 – 19,319,998
Length 113
Max. P 0.706053
window11090

overview

Window 0

Location 19,319,885 – 19,319,998
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.80
Mean single sequence MFE -36.46
Consensus MFE -27.28
Energy contribution -28.00
Covariance contribution 0.72
Combinations/Pair 1.09
Mean z-score -1.92
Structure conservation index 0.75
SVM decision value 0.36
SVM RNA-class probability 0.706053
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19319885 113 + 22407834
CUUAUCUAUCGAUUGCAUGUAGGACAGCCCGAGGUCCUAAACUCGGCUGCUGAUAAGAAGUUCGUCGAA-------AGACGUGAUUUAUGAUCAGGUGCAACAAAAGUGGACACAAUGCA
....(((((...((((((......(((((.(((........))))))))(((((...(((((((((...-------.)))).)))))...))))))))))).....)))))......... ( -36.60)
>DroSec_CAF1 12452 113 + 1
CUUAUCUAUCGAUUGCAUGUAGGCCAGCCCGAGGUCCUAAACUCGGCUGCUGAUAAGGAGUUCGUCGAA-------AGACGUGAUUUAUGGUCAGGUGCAACAAAAGUGGACACAAUGCA
....(((((...((((((......(((((.(((........))))))))(((((...(((((((((...-------.)))).)))))...))))))))))).....)))))......... ( -37.10)
>DroSim_CAF1 14278 113 + 1
CUUAUCUAUCGAUUGCAUGUAGGCCAGCCCGAGGUCCUAAACUCGGCUGCUGAUAAGGAGUUCGUCGAA-------AGACGUGAUUUAUGGUCAGGUGCAACAAAAGUGGACACAAUGCA
....(((((...((((((......(((((.(((........))))))))(((((...(((((((((...-------.)))).)))))...))))))))))).....)))))......... ( -37.10)
>DroEre_CAF1 11606 111 + 1
CUUAUCUAUCGAUUGCAUGUAGGCCAGCCCGAGGUCCUCCACUCAGCCGCUGAUAA-GAGUUCGUCGAA-------AGGCGUGAUUUAUGGUCAGGUGCAACAAA-GUGGCCUCAAUUCA
.................((.((((((....(((........))).(((.(((((..-(((((((((...-------.)))).)))))...)))))).))......-.))))))))..... ( -32.70)
>DroYak_CAF1 12739 120 + 1
CUUAUCUAUCGAUUGCAUGUAGGCCAGCCCGAGGUCCUCAACUCAGCUGCUGAUAAGGAGAUCGUCGAAAGACGAAAGACGUGAUUUAUGGUCAGGUGCAACAAAGGUGGCCUCAAUGCA
.............(((((..((((((.((.(((........))).(.(((...........(((((....)))))...((.((((.....)))).))))).)...))))))))..))))) ( -38.80)
>consensus
CUUAUCUAUCGAUUGCAUGUAGGCCAGCCCGAGGUCCUAAACUCGGCUGCUGAUAAGGAGUUCGUCGAA_______AGACGUGAUUUAUGGUCAGGUGCAACAAAAGUGGACACAAUGCA
....(((((...((((((......(((((.(((........))))))))(((((...(((((((((...........)))).)))))...))))))))))).....)))))......... (-27.28 = -28.00 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:49 2006