| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,318,518 – 19,318,632 |
| Length | 114 |
| Max. P | 0.998693 |
| Location | 19,318,518 – 19,318,632 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.17 |
| Mean single sequence MFE | -42.28 |
| Consensus MFE | -37.82 |
| Energy contribution | -37.66 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.89 |
| SVM decision value | 3.19 |
| SVM RNA-class probability | 0.998693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19318518 114 - 22407834 UUCAGCUGCCACUU------GAGGGCCUCGAAAGGGGCGUGACCCGUGAUCACAAAGGAAAUCUUAAUUGCCGCUUAACGAGCAAUUGAGGACUCUAUUCAAGGGAGUGGCGGAUACAGC .....((((((((.------....(((((....)))))....(((.(((.......(((..((((((((((((.....)).))))))))))..)))..))).)))))))))))....... ( -44.50) >DroSec_CAF1 11115 114 - 1 UUCAGCUGCCACUU------CAAGGCCUCAAAAGGGGCGUGACCCGUGAUCACAAAGGAAAUCUUAAUUGCCGCUUAACGAGCAAUUGAGGACUCUAUUCGAGGGAGUGGCGGAUAGAGC (((..(((((((((------(...(((((....)))))((((.......))))...(((..((((((((((((.....)).))))))))))..))).......))))))))))...))). ( -42.80) >DroSim_CAF1 12952 114 - 1 UUCAGCUGCCACUU------CAAGGCCUCAAAAGGGGCGUGACCCGUGAUCACAAAGGAAAUCUUAAUUGCCGCUUAACGAGCAAUUGAGGACUCUAUUCGAGGGAGUGGCGGAUACAGC .....(((((((((------(...(((((....)))))((((.......))))...(((..((((((((((((.....)).))))))))))..))).......))))))))))....... ( -42.30) >DroEre_CAF1 10324 116 - 1 -UCAGCUGCCACUUGCCACCGAGGGCCUCA--AGGGGCGUGGCCGCUGAUCACAAAGGAGAUCUUAAUUGCCGCUUAACGAGCGAUUGAGCGCUCUGUUCAAGGGAGUGGCGCAUAUCG- -(((((.(((((...((.....))((((..--..))))))))).)))))....................(((((((((((((((......))))).))).....)))))))........- ( -43.50) >DroYak_CAF1 11405 113 - 1 UUCGGCUGCCACUU------GAGGGCUUCA-AAGGGGCGUGGCCCGUGAUCACAAAGGAAAUCUUAAUUGCCGCUUAACGAGCAAUUGAGGACUCUAUUAGAGGGAGUGGCGGAUAUAGC .....(((((((((------..(((((.(.-.......).)))))................((((((((((((.....)).)))))))))).(((.....))).)))))))))....... ( -38.30) >consensus UUCAGCUGCCACUU______GAGGGCCUCAAAAGGGGCGUGACCCGUGAUCACAAAGGAAAUCUUAAUUGCCGCUUAACGAGCAAUUGAGGACUCUAUUCGAGGGAGUGGCGGAUACAGC .....(((((((((..........(((((....)))))((((.......))))...(((..((((((((((((.....)).))))))))))..)))........)))))))))....... (-37.82 = -37.66 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:41 2006