Locus 6947

Sequence ID 2L_DroMel_CAF1
Location 19,315,156 – 19,315,251
Length 95
Max. P 0.938202
window11079

overview

Window 9

Location 19,315,156 – 19,315,251
Length 95
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 80.58
Mean single sequence MFE -22.16
Consensus MFE -14.77
Energy contribution -13.73
Covariance contribution -1.04
Combinations/Pair 1.38
Mean z-score -2.24
Structure conservation index 0.67
SVM decision value 1.29
SVM RNA-class probability 0.938202
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19315156 95 - 22407834
ACUUUUCGGCUGUGUUGUGUUUGUUU----AUG--------UUUCUAUGUUUUUAUGAUUUUAUGGACCACAUAUUUUUGAAUACAUAACCAUUCUCAAGUGGCCGU----
......((((..(.(((.(..((.((----(((--------(((((((((.((((((....))))))..))))).....))).)))))).))..).))))..)))).---- ( -20.10)
>DroSec_CAF1 7768 95 - 1
AUUUUUCGGCUGCCUUGUGUUUGUUU----AUG--------UUGCUAUGUUUUUAUGAUUUCAUGGACCACAUAUUUUCAAAUACAUAACCAUUCUCAAGUGGCCGU----
......((((..(.(((.(..((.((----(((--------(((.(((((.((((((....))))))..)))))....))...)))))).))..).))))..)))).---- ( -23.80)
>DroSim_CAF1 9621 95 - 1
AUUUUUCGGCUGCCUUGUGUUUGUUU----AUG--------UUGCUAUGUUUUUAUGAUUUUAUGGACCACAUAUUUUCAAAUACAUAACCAUUCUCAAGUGGCCGU----
......((((..(.(((.(..((.((----(((--------(.............(((...((((.....))))...)))...)))))).))..).))))..)))).---- ( -21.49)
>DroEre_CAF1 7132 99 - 1
AUUUUUCGGCUGCGUGGUGCUUGUGUUCC-AUG----------UUUAUGUUUCCAUGUUUUCAUGGACCACAUAUUUUCGAGUACACAAUCAUUCUCAAGUGGC-GUUAAU
........((..(.(((((.((((((...-...----------..(((((.((((((....))))))..))))).........)))))).)))...)).)..))-...... ( -25.03)
>DroYak_CAF1 7955 110 - 1
AUU-UUCGGCUACGUUGUGUUUAUGUGCCUAUGUUGUUAUGUUUUUAUGUUGUUAUGUUUUUAUGGACCGCAUAUUUUCGAAUACACAAUCAUUCUCAAGUGGCUGUUAAA
.((-..((((((((((((((...((....(((((.((((((....((((....))))....))).))).)))))....))...))))))).........)))))))..)). ( -20.40)
>consensus
AUUUUUCGGCUGCGUUGUGUUUGUUU____AUG________UUUCUAUGUUUUUAUGAUUUUAUGGACCACAUAUUUUCGAAUACAUAACCAUUCUCAAGUGGCCGU____
......(((((((..((((((((......................(((((.((((((....))))))..)))))....)))))))).............)))))))..... (-14.77 = -13.73 +  -1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:39 2006