Locus 6946

Sequence ID 2L_DroMel_CAF1
Location 19,314,338 – 19,314,436
Length 98
Max. P 0.857048
window11078

overview

Window 8

Location 19,314,338 – 19,314,436
Length 98
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 87.32
Mean single sequence MFE -20.59
Consensus MFE -17.46
Energy contribution -17.52
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -1.82
Structure conservation index 0.85
SVM decision value 0.81
SVM RNA-class probability 0.857048
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19314338 98 + 22407834
UGA-----------AGCUGCCAUC-CCACCUAUUU-UCCAUUCUGGCUUAACGCCUUUCCAUUAGAUUUACACUUAUUCAUUAGUUGCAACAUGCAACAGCUGCAGCGAUG
...-----------.(((((....-..........-........(((.....)))............................(((((.....)))))....))))).... ( -19.50)
>DroSec_CAF1 7204 98 + 1
UGU-----------AGCUGCCAUC-CCACCUAUUU-UCCAUUCUGGCUUAACGCCUUUCCAUUAGAUUUACACUUAUUCAUUAGUUGCAACAUGCAACAGCUGCAGCGAUG
(((-----------((((......-..........-........(((.....)))............................(((((.....))))))))))))...... ( -19.80)
>DroEre_CAF1 6405 101 + 1
----------CUCCAGCUGCCAUCCCCACCUAUCGCUGCAUUCUGGCUUAACGCCUUUCCAUUAGAUUUACACUUAUUCAUUAGUUGCAACAUGCAACAGCUGCAGCAAUG
----------........................((((((....(((.....)))............................(((((.....)))))...)))))).... ( -21.10)
>DroYak_CAF1 7123 110 + 1
UAUAGUUGGGCUCCAGUUUCCAUCCCCACCUAUUUCUGCAUUCUGGCUUAACGCCU-UCCAUUAGAUUUACACUUAUUCAUUAGUUGCAACAUGCAACAGCUGCAGCAAUG
.((((.((((..............)))).))))..(((((....(((.....))).-..........................(((((.....)))))...)))))..... ( -21.94)
>consensus
UGU___________AGCUGCCAUC_CCACCUAUUU_UCCAUUCUGGCUUAACGCCUUUCCAUUAGAUUUACACUUAUUCAUUAGUUGCAACAUGCAACAGCUGCAGCAAUG
...............(((((........................(((.....)))............................(((((.....)))))....))))).... (-17.46 = -17.52 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:38 2006