Locus 6945

Sequence ID 2L_DroMel_CAF1
Location 19,313,695 – 19,313,815
Length 120
Max. P 0.692843
window11077

overview

Window 7

Location 19,313,695 – 19,313,815
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.75
Mean single sequence MFE -26.00
Consensus MFE -20.22
Energy contribution -20.90
Covariance contribution 0.68
Combinations/Pair 1.07
Mean z-score -1.70
Structure conservation index 0.78
SVM decision value 0.33
SVM RNA-class probability 0.692843
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19313695 120 + 22407834
UCGGGUCAGGAGAACCACUCUCUAUUCGCACUAAAGCCGCGAUACAAUAAACCAACCGUCCCACCAGACACGCAUAUUGAGCAAUCAAAGCCAACUGUGCCAGCACAUGCACUGAAAAAA
..(((.(.(((((.....)))))..((((.........))))...............).)))..(((....((((((((.((.......))))).)))))..((....)).)))...... ( -26.60)
>DroSec_CAF1 6574 120 + 1
UCGGGUCAGGAGAACCACUCUCUAUUCGCACUAAAGCCGCGAUACAAUAAACCAACCGUCCCACCAGACACGCAUAUUGAGCAAUCAAAGCCAACUGUGCCAGCACAUGCACUGAAAAAA
..(((.(.(((((.....)))))..((((.........))))...............).)))..(((....((((((((.((.......))))).)))))..((....)).)))...... ( -26.60)
>DroSim_CAF1 7046 120 + 1
UCGGGUCAGGAGAACCACUCUCUAUUCGCACUAAAGCCGCGAUACAAUAAACCAACCGUUCCACCAGACACGCAUAUUGAGCAAUCAAAGCCAACUGUGCCAGCACAUGCACAGAAAAAA
..(((((.(((((.....)))))..((((.........))))........................))).......((((....))))..))..((((((........))))))...... ( -25.50)
>DroEre_CAF1 5832 119 + 1
UCGGGUCAGCAGAACCACUCGCUUUUCGCACUAAAACCGCGAUACAAUAAACCAAUCGUCCCACGAGACACGCGUACUGAGCAAUCAAAGCCAACUGUGCCUGC-CGUGCACUGCAAAAA
........((((........((...((((.........))))...............(((......)))..))((((.(.(((..((.((....)).))..)))-))))).))))..... ( -22.10)
>DroYak_CAF1 6521 119 + 1
-GGGGUCAGGAGAACCACUCUCUAUUCGCACAAAAACCGCGAUACAAUAAACCAAUCGCCCCACCAGACACGCAUAUUGAGCAAUCAAAGCCAACUGUGCCUGCUCAUGCACUGCAAUAA
-(((((..(((((.....)))))..((((.........))))...............))))).........(((...((((((..((.((....)).))..)))))).....)))..... ( -29.20)
>consensus
UCGGGUCAGGAGAACCACUCUCUAUUCGCACUAAAGCCGCGAUACAAUAAACCAACCGUCCCACCAGACACGCAUAUUGAGCAAUCAAAGCCAACUGUGCCAGCACAUGCACUGAAAAAA
..(((.(.(((((.....)))))..((((.........))))...............).)))..(((....((((((((.((.......))))).)))))..((....)).)))...... (-20.22 = -20.90 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:37 2006