| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,312,024 – 19,312,137 |
| Length | 113 |
| Max. P | 0.500000 |
| Location | 19,312,024 – 19,312,137 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 78.26 |
| Mean single sequence MFE | -28.51 |
| Consensus MFE | -22.92 |
| Energy contribution | -23.70 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19312024 113 + 22407834 GUACACCUGUUGAUUGACUGCGAAGGAGCAGGAGGCAUUUCCGUCC--AUAUACAUCGAUAUAUCCAUUAUAAGAGCUUAAAACGGAUUGUGCUCUGCUUUUUAUUAAGUCCAGA ......(((......((((...(((((((((..(((((.(((((..--.......((..((((.....)))).)).......)))))..))))))))))))))....))))))). ( -27.79) >DroSec_CAF1 4926 97 + 1 GUAUACCUGUUAAUAGACUGCGGAGGAGCAGGGGGCAUUUCCGACCCC------------------AUUAUAAGAGCUUCAAACGGAUUGUGCUCUGCCCCUUAUUCAGUCCAGA ......(((......(((((..((((.((((((.(((..((((.....------------------.................)))).))).)))))).))))...)))))))). ( -30.45) >DroSim_CAF1 5387 115 + 1 GUUUACAUGUUGAUUGACUGCGGAGGAGCACGAGGCAUUUCCGACCCCAUAUACAUGGAUAUAUCCAUUAUAAAAGCUUGAAACGGAUUGUGCUCUGCUUAUUAUUCAGUCUAGA ...............(((((..((.(((((.(((.(((.((((...((((....)))).((((.....))))...........))))..))))))))))).))...))))).... ( -27.30) >consensus GUAUACCUGUUGAUUGACUGCGGAGGAGCAGGAGGCAUUUCCGACCCCAUAUACAU_GAUAUAUCCAUUAUAAGAGCUUAAAACGGAUUGUGCUCUGCUUAUUAUUCAGUCCAGA ...............(((((..(((((((((..(((((.((((........................................))))..))))))))))))))...))))).... (-22.92 = -23.70 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:28 2006