| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,310,382 – 19,310,502 |
| Length | 120 |
| Max. P | 0.577702 |
| Location | 19,310,382 – 19,310,502 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.36 |
| Mean single sequence MFE | -40.82 |
| Consensus MFE | -33.07 |
| Energy contribution | -32.95 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.577702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19310382 120 - 22407834 ACGCGGCAUGUGUCACGAUGGCAACCGAGUCACUUGCCGCAAAUUGGUUUGCAUUUCGCAGGGGCGAGGGCUGAAAAGCAUAUCCCAUGCCUCAUGCACCAUGCCUCCCAUCUCGUUAGU ..((((((.(((.(.((..(....))).).))).))))))....(((...((((...(((((((((.(((((....))).....)).)))))).)))...))))...))).......... ( -43.10) >DroSec_CAF1 3176 120 - 1 ACGCGGCAUGUGUCACGAUGGCAACCGAGUCACUUGCCGCAAAUUGGUUUGCAUUUCGCAGGGGCCAGGGCUGAAAAGCAUAUCCCAUGCCUCAUGCCCCAUGCCACCCAUCUCGUUAGU ..((((((.(((.(.((..(....))).).))).))))))....(((...((((...((((((((..(((((....))).....))..))))).)))...))))...))).......... ( -40.90) >DroSim_CAF1 3699 119 - 1 ACGCGGCAUGUGUCACGAUGGCAACCGAGUCACUUGCCGCAAUUUGGUUUGCAUUUCGCAGGGGCGAG-GCUGAAAAGCAUAUCCCAUGCCUCAUGCCCCAUGCCUCCCAUCUCGUUAGU ..((((((.(((.(.((..(....))).).))).)))))).....(((.(((.....)))((((((((-((((............)).)))))..)))))..)))............... ( -41.90) >DroEre_CAF1 2757 104 - 1 --GCGGCAUGUGUCACGAUGGCAACCGAGUCACUUGCCGCAAAUUGGUUUGCAUUUCGCAGGGGCGAGGGCUGAGCAGCA--------------UGCCCCAUGCCUCCCAUCUCGUUAGU --((((((.(((.(.((..(....))).).))).))))))....(((..(((.....)))((((((.((((((.....))--------------.))))..))))))))).......... ( -38.50) >DroYak_CAF1 3234 106 - 1 ACGCGGCAUGUGUCACGAUGGCAACCGAGUCACUUGCCGCAAAUUGGUUUGCAUUUCGCAGGGGCGGGGGUUGAGAAGCA--------------AGCCUCAUGCCUCCCAUCUCGUUAGU ..((((((.(((.(.((..(....))).).))).))))))....(((..(((.....)))((((((((((((........--------------)))))).))))))))).......... ( -39.70) >consensus ACGCGGCAUGUGUCACGAUGGCAACCGAGUCACUUGCCGCAAAUUGGUUUGCAUUUCGCAGGGGCGAGGGCUGAAAAGCAUAUCCCAUGCCUCAUGCCCCAUGCCUCCCAUCUCGUUAGU ..((((((.(((.(.((..(....))).).))).)))))).....(((.(((.....)))(((((....(((....)))................)))))..)))............... (-33.07 = -32.95 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:25 2006