Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,304,461 – 19,304,553 |
Length | 92 |
Max. P | 0.570252 |
Location | 19,304,461 – 19,304,553 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 78.90 |
Mean single sequence MFE | -25.88 |
Consensus MFE | -19.89 |
Energy contribution | -19.53 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.34 |
Mean z-score | -0.97 |
Structure conservation index | 0.77 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570252 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19304461 92 - 22407834 -------------GGAAGGGAGAGCUAAGGAGCCACCUCUUGGUUACUCUUGAAGUAGCAA-AGUUGAACACUCAGCACUGCACUUUGCAAGUAUCUGAAGGGAGC -------------........(.(((....)))).((..(..(.((((..((((((.(((.-.(((((....)))))..)))))))))..)))).)..)..))... ( -24.30) >DroSec_CAF1 45356 89 - 1 -------------GGAAGGGAGAGCCAAGGAGC---CUCUUGGUUACUCUUGAAGUAGCAA-AGUUGAACACUCAGCACUGCACUUUGCAAGUAUCUGAAGGGAGC -------------(((.(((((((((((((...---.)))))))).)))))(((((.(((.-.(((((....)))))..)))))))).......)))......... ( -26.10) >DroSim_CAF1 52750 92 - 1 -------------GGAAGGGAGAGCCAAGGAGCCACCUCUUGGUUACUCUUGAAGUAGCAA-AGUUGAACACUCAGCACUGCACUUUGCAAGUAUCUGAAGGGAGC -------------(((.(((((((((((((.......)))))))).)))))(((((.(((.-.(((((....)))))..)))))))).......)))......... ( -25.80) >DroEre_CAF1 50816 92 - 1 -------------AGACGGGAGGGCCAAGGAACCACCUCCUGGUUACUCUUGAAGUAGCAA-AGUUGAACACUCAGCACAGCACUUUGCAAGUAUCUAAAGGAAGC -------------((((((((((............)))))))..((((..((((((.((..-.(((((....)))))...))))))))..)))))))......... ( -24.80) >DroYak_CAF1 51483 92 - 1 -------------GGAAGGGAGAGCCAAGAAACCACCUCUUGGUUACUCAUGAAGUAGCAA-AGUUGAACACUCAGCCCAGCACUUUGCAAGUAUCUAAAGGAAGC -------------(((...(((((((((((.......)))))))).)))..(((((.((..-.(((((....)))))...))))))).......)))......... ( -23.10) >DroAna_CAF1 74722 104 - 1 CAGUGCAUUCUGCUGGCAGUAGAACCGGAACAGGGCCUUUUGGUUACUUUUGAAGUGGCAAAAGUUGACCAAUCAGCAGUGGACUCUCGGAGUUGCAGGAGGGA-- ...((((((((((.....))))))(((((.((..((...(((((((((((((......)))))).)))))))...))..))...)).)))...)))).......-- ( -31.20) >consensus _____________GGAAGGGAGAGCCAAGGAACCACCUCUUGGUUACUCUUGAAGUAGCAA_AGUUGAACACUCAGCACUGCACUUUGCAAGUAUCUGAAGGGAGC .............(((.(((((((((((((.......)))))))).)))))(((((.(((...(((((....)))))..)))))))).......)))......... (-19.89 = -19.53 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:16 2006