Locus 6935

Sequence ID	2L_DroMel_CAF1
Location	19,303,039 – 19,303,131
Length	92
Max. P	0.999093

overview

Window 3

Location	19,303,039 – 19,303,131
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	92.95
Mean single sequence MFE	-23.42
Consensus MFE	-22.78
Energy contribution	-22.98
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-1.92
Structure conservation index	0.97
SVM decision value	3.37
SVM RNA-class probability	0.999093
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19303039 92 - 22407834
GACCUUUGGGUGCUCAGCGCCGGUAAAUGGCGACAAUUUGUAAAGCGAGAGGAAAAGCUGUUGAAUGGAAAGCUGGGUGAAUGUGAAUGCGA
.(((....)))(((((((.(((...((((((..(..((((.....))))..)....))))))...)))...))))))).............. ( -23.90)
>DroSec_CAF1 43945 86 - 1
GACCUUUGGGUGCUCAGCGCCGGUAAAUGGCGACAAUUUGUAAAGCGAGAGGAAAAGCUGUUGAAUGGAAAGCUGGGUGAAUAUG------A
.(((....)))(((((((.(((...((((((..(..((((.....))))..)....))))))...)))...))))))).......------. ( -23.90)
>DroSim_CAF1 51353 86 - 1
GACCUUUGGGUGCUCAGCGCCGGUAAAUGGCGACAAUUUGUAAAGCGAGAGGAAAAGCUGUUGAAUGGAAAGCUGGGUGAAUGCG------A
.(((....)))(((((((.(((...((((((..(..((((.....))))..)....))))))...)))...))))))).......------. ( -23.90)
>DroEre_CAF1 49430 81 - 1
GACCUUUGGGUGCUCAGCGCCGGUAAAUGGCGACAAUUUGUAAAGCGAGAGGAAAAGCUGUUGAAUGGAAAGCUGGCUGAA-----------
.(((....)))((.((((.(((...((((((..(..((((.....))))..)....))))))...)))...))))))....----------- ( -21.50)
>DroYak_CAF1 50061 81 - 1
GACCUUUGGGUGCUCAGCGCCGGUAAAUGGCGACAAUUUGUAAAGCGAGAGGAAAAGCUGUUGAAUGGAAAGCUGGGUGAA-----------
.(((....)))(((((((.(((...((((((..(..((((.....))))..)....))))))...)))...)))))))...----------- ( -23.90)
>consensus
GACCUUUGGGUGCUCAGCGCCGGUAAAUGGCGACAAUUUGUAAAGCGAGAGGAAAAGCUGUUGAAUGGAAAGCUGGGUGAAU__G______A
.(((....)))(((((((.(((...((((((..(..((((.....))))..)....))))))...)))...))))))).............. (-22.78 = -22.98 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:15 2006