| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,302,416 – 19,302,518 |
| Length | 102 |
| Max. P | 0.562056 |
| Location | 19,302,416 – 19,302,518 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.87 |
| Mean single sequence MFE | -29.29 |
| Consensus MFE | -17.44 |
| Energy contribution | -19.16 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562056 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19302416 102 - 22407834 CCUCUGCUGGCACUCG---------------UU-UGCCACUG--AGGGCUCUUGAGAUUUAUGGCUCUGUGAUUAUUGCUUCACUUGUCUGGAGAUAGAACAGAAUCUGUCUCAUAAAUC ((((.(.(((((....---------------..-)))))).)--)))........((((((((((...((((........))))..)))..((((((((......))))))))))))))) ( -33.50) >DroPse_CAF1 28571 119 - 1 CCUAUGCUAGCAUUCCCGCUCUCUCUUUUUCUU-UGCAAGAGGAUGAGCACUUGAGAUUUAUGACCCUGUGAUUAUUGCUUCACUUGUCUGAAGAUAUAACAGAAUCCGUCUCAUAAAUC .................((((..(((((((...-...))))))).))))......(((((((((..(.((((........))))...((((.........))))....)..))))))))) ( -23.90) >DroEre_CAF1 48811 102 - 1 CCUCUGCUGGCUCUCG---------------UU-UGCCACCG--AGGGCUCUUGAGAUUUAUGGCUCUGUGAUUAUUGCUUCACUUGUCUGGAGAUAGAGCAGAAUCUGUCUCAUAAAUC ((((.(.((((.....---------------..-.))))).)--)))........((((((((((...((((........))))..)))..((((((((......))))))))))))))) ( -33.80) >DroYak_CAF1 49440 102 - 1 CCCCUGCUGGCUCUCG---------------UU-UGCCACCG--AGGGCUCUUGAGAUUUAUGGCUCUGUGAUUAUUGCUUCACUUGUCUGGAGAUAGAACAGAAUCUGUCUCAUAAAUC .(((((.((((.....---------------..-.)))).).--)))).......((((((((((...((((........))))..)))..((((((((......))))))))))))))) ( -32.50) >DroAna_CAF1 72701 103 - 1 CCUCUGCUGGCACUCG---------------UUGUGCCUCUG--AGAGCACUCGAGAUUUAUGGCUCCGUGAUUAUUGCUUCACUUGUCUGGAGAUAGAACAGAAUCUGUCUCAUAAAUC .(((....(((((...---------------..)))))...)--)).........((((((((((...((((........))))..)))..((((((((......))))))))))))))) ( -32.00) >DroPer_CAF1 26895 119 - 1 CCUAUGCUAGCAUUCCCUCUCUCUCUUUUUCUU-UGCAAGAGGAUGAGCACUUGAGAUUUAUGACCCUGUGAUUAUUGCUUCCCUUGUCUGAAGAUAUAACAGAAUCCGUCUCAUAAAUC ....((((..(((..(((((..(..........-.)..))))))))))))..((((((....((..((((........((((........)))).....))))..)).))))))...... ( -20.02) >consensus CCUCUGCUGGCACUCG_______________UU_UGCCACAG__AGAGCACUUGAGAUUUAUGGCUCUGUGAUUAUUGCUUCACUUGUCUGGAGAUAGAACAGAAUCUGUCUCAUAAAUC .((((..((((........................)))).....)))).......((((((((((...((((........))))..)))..((((((((......))))))))))))))) (-17.44 = -19.16 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:14 2006