Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,301,792 – 19,301,904 |
Length | 112 |
Max. P | 0.811677 |
Location | 19,301,792 – 19,301,904 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 84.33 |
Mean single sequence MFE | -24.33 |
Consensus MFE | -23.25 |
Energy contribution | -23.50 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.96 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19301792 112 + 22407834 AAGCGCCACUCCAGAGAACCCAGGUCACCAGGUCUCCAAGGCUGCCCACUCC----CACAUCCCCAACCCGCAUCCCGCACCCACAGCCAAUCCUGCCACCAUUCGUGGCGUGUAA ..(((((((....((((.((..(....)..))))))...(((((........----............................)))))................))))))).... ( -24.62) >DroSec_CAF1 42729 98 + 1 AAGCGCCACUCCAGAGAACCCAGGUCACCAGGUCUCCAAGGCUGCCCACUCC----CACAUUCCC--------------AUCCCCAGCCAAUCCUGCCACCAUUCGUGGCGUGUAA ..(((((((....((((.((..(....)..))))))...(((((........----.........--------------.....)))))................))))))).... ( -24.75) >DroSim_CAF1 50123 111 + 1 AAGCGCCACUCCAGAGAACCCAGGUCACCAGGUCUCCAAGGCUGCCCACUCC----CACAUCCCCGUCCC-CAUCCCGCAUCCCCAGCCAAUCCUGCCACCAUUCGUGGCGUGUAA ..(((((((....((((.((..(....)..))))))...(((((........----..............-.............)))))................))))))).... ( -24.25) >DroEre_CAF1 48244 102 + 1 AAGCGCCACUCCAGAAAACCCAGGUCACCAGGUCUCCAAGGCUGGCCACUCCCCACCGCCUCCCUGU--------------CCACAGCCAAUCCUACCACCAUCCGUGGCGUGUAA ..(((((((............((..(....)..))....(((((...((................))--------------...)))))................))))))).... ( -23.69) >consensus AAGCGCCACUCCAGAGAACCCAGGUCACCAGGUCUCCAAGGCUGCCCACUCC____CACAUCCCCGU____________AUCCACAGCCAAUCCUGCCACCAUUCGUGGCGUGUAA ..(((((((....((((.((..(....)..))))))...(((((........................................)))))................))))))).... (-23.25 = -23.50 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:13 2006